Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736414
Identifier: 187736414
GI number: 187736414
Start: 2344345
End: 2345433
Strand: Reverse
Name: 187736414
Synonym: Amuc_1932
Alternate gene names: NA
Gene position: 2345433-2344345 (Counterclockwise)
Preceding gene: 187736415
Following gene: 187736413
Centisome position: 88.04
GC content: 56.29
Gene sequence:
>1089_bases ATGACCTGCAACTTGGAAAAAAACAAAGGTGTTTCCGTCAAGTCGCTCCCGCTGGGCGGCGAAGGCGCATCTCTGCAATT CGTTACGCTTGCCGGAAGCGAACCTGGGCAGTTGGCCGAGCATGCCGAATTACTCCAAAAAGCTGAAAAAAGCGGTTTTC GGTGGATTGGCCCGGAAGTGTACGGCAGCGCTGATCTGGATCTCTCCCCGGTGCCCGGGGCGGGGATGACTGCCTTTTTG GGTACGAAAACGGGCGCATCCTTCTATCGAGGCATGCAAATTTGCGCGGTGGAGGGGATAAATGCCCGGGCGATTGAGTT TAATGGCCGCACCGCCGGGGTTTTTTATGAGGATGAATATGCCGAGTATGCCGTTTTGGGCGGTTTGTCGCCCCGCGACC GGACAGCCGGACGGACTGAGCAGACATTGGATGTATTCCGGCAGATGGAAGAAGCGCTGAACCGGGCCGGCATGGATTTT TCCCACGTGGTCCGCACATGGTTTTACAACAACCGCCTGCTGGACTGGTATGAAGAGTTCAACCGCGCCCGCGACACATT TTTTGAAAGCCGCGGCGTGTTTGATCGTCTGGTTCCGGCCAGTACGGGGATTGGTTCCGGCAATCGGGAACATGCGGCCT TGTCGGCCCGCGTATTTGCCATTCGGCCTAAGGGCGACCGTGTGACGGTAAAAGATATCCCTTCGCCTCTGCAATGTTCA GCTCAGGATTACCGCAGCTCATTCAGCCGTGCGATAGAAGTGGACCACCCTCTCTTCCGGCAAGTCATCGTCTCCGGCAC GGCCAGCATTGCCCCTGGCGGCGAATCCGTACATCTCGGCGATATCGACAAACAAACAGAGCTCTCGCTGGACGTGATTG AAGCCATCCTGAAATCACGCGGCATGGGCTGGAAGGATGTCGTCCGCTCCGTAGCCTATTTCAAAGACAAGGATTATGCC CCTCACTACGAAAAAATAGCTCTGCGCCGCGGCCTCGCCATCATGCCCTGCATCGGCATACAGGCCGATGTGTGCCGGGA CAATCTGTTGTTTGAAATGGAACTTGATGCAGCCGTGTTGAAAGCCTGA
Upstream 100 bases:
>100_bases TGAAAGCGAATTCTCCCGTGAAATGTTCCGCCATCTCTCCGCCGAAGAGCGCGGCCAACTGATTCAATTCCTGAAAGCAC TTTAAAAAAATAATATACTC
Downstream 100 bases:
>100_bases GAAAATGGCATTCAGAATCATTCAGTGGAGCTTTCTGCTTGGCCTTGCCTTTTATTCGCTCTTTATCGGGGCAGCTCAAG TGTCCTTGTCCGACCTGTGG
Product: Endoribonuclease L-PSP
Products: NA
Alternate protein names: Translation Initiation Inhibitor; Endoribonuclease L-PSP Family; Endoribonuclease L-PSP Family Protein
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MTCNLEKNKGVSVKSLPLGGEGASLQFVTLAGSEPGQLAEHAELLQKAEKSGFRWIGPEVYGSADLDLSPVPGAGMTAFL GTKTGASFYRGMQICAVEGINARAIEFNGRTAGVFYEDEYAEYAVLGGLSPRDRTAGRTEQTLDVFRQMEEALNRAGMDF SHVVRTWFYNNRLLDWYEEFNRARDTFFESRGVFDRLVPASTGIGSGNREHAALSARVFAIRPKGDRVTVKDIPSPLQCS AQDYRSSFSRAIEVDHPLFRQVIVSGTASIAPGGESVHLGDIDKQTELSLDVIEAILKSRGMGWKDVVRSVAYFKDKDYA PHYEKIALRRGLAIMPCIGIQADVCRDNLLFEMELDAAVLKA
Sequences:
>Translated_362_residues MTCNLEKNKGVSVKSLPLGGEGASLQFVTLAGSEPGQLAEHAELLQKAEKSGFRWIGPEVYGSADLDLSPVPGAGMTAFL GTKTGASFYRGMQICAVEGINARAIEFNGRTAGVFYEDEYAEYAVLGGLSPRDRTAGRTEQTLDVFRQMEEALNRAGMDF SHVVRTWFYNNRLLDWYEEFNRARDTFFESRGVFDRLVPASTGIGSGNREHAALSARVFAIRPKGDRVTVKDIPSPLQCS AQDYRSSFSRAIEVDHPLFRQVIVSGTASIAPGGESVHLGDIDKQTELSLDVIEAILKSRGMGWKDVVRSVAYFKDKDYA PHYEKIALRRGLAIMPCIGIQADVCRDNLLFEMELDAAVLKA >Mature_361_residues TCNLEKNKGVSVKSLPLGGEGASLQFVTLAGSEPGQLAEHAELLQKAEKSGFRWIGPEVYGSADLDLSPVPGAGMTAFLG TKTGASFYRGMQICAVEGINARAIEFNGRTAGVFYEDEYAEYAVLGGLSPRDRTAGRTEQTLDVFRQMEEALNRAGMDFS HVVRTWFYNNRLLDWYEEFNRARDTFFESRGVFDRLVPASTGIGSGNREHAALSARVFAIRPKGDRVTVKDIPSPLQCSA QDYRSSFSRAIEVDHPLFRQVIVSGTASIAPGGESVHLGDIDKQTELSLDVIEAILKSRGMGWKDVVRSVAYFKDKDYAP HYEKIALRRGLAIMPCIGIQADVCRDNLLFEMELDAAVLKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39807; Mature: 39675
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCNLEKNKGVSVKSLPLGGEGASLQFVTLAGSEPGQLAEHAELLQKAEKSGFRWIGPEV CCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCHH YGSADLDLSPVPGAGMTAFLGTKTGASFYRGMQICAVEGINARAIEFNGRTAGVFYEDEY CCCCCCCCCCCCCCCCEEEEECCCCHHHHCCEEEEEECCCCEEEEEECCCEEEEEECCCC AEYAVLGGLSPRDRTAGRTEQTLDVFRQMEEALNRAGMDFSHVVRTWFYNNRLLDWYEEF CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH NRARDTFFESRGVFDRLVPASTGIGSGNREHAALSARVFAIRPKGDRVTVKDIPSPLQCS HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEHHCCCCCCCCC AQDYRSSFSRAIEVDHPLFRQVIVSGTASIAPGGESVHLGDIDKQTELSLDVIEAILKSR HHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHC GMGWKDVVRSVAYFKDKDYAPHYEKIALRRGLAIMPCIGIQADVCRDNLLFEMELDAAVL CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCHHHH KA CC >Mature Secondary Structure TCNLEKNKGVSVKSLPLGGEGASLQFVTLAGSEPGQLAEHAELLQKAEKSGFRWIGPEV CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCHH YGSADLDLSPVPGAGMTAFLGTKTGASFYRGMQICAVEGINARAIEFNGRTAGVFYEDEY CCCCCCCCCCCCCCCCEEEEECCCCHHHHCCEEEEEECCCCEEEEEECCCEEEEEECCCC AEYAVLGGLSPRDRTAGRTEQTLDVFRQMEEALNRAGMDFSHVVRTWFYNNRLLDWYEEF CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH NRARDTFFESRGVFDRLVPASTGIGSGNREHAALSARVFAIRPKGDRVTVKDIPSPLQCS HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEHHCCCCCCCCC AQDYRSSFSRAIEVDHPLFRQVIVSGTASIAPGGESVHLGDIDKQTELSLDVIEAILKSR HHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHC GMGWKDVVRSVAYFKDKDYAPHYEKIALRRGLAIMPCIGIQADVCRDNLLFEMELDAAVL CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCHHHH KA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA