Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736407
Identifier: 187736407
GI number: 187736407
Start: 2336696
End: 2337652
Strand: Reverse
Name: 187736407
Synonym: Amuc_1925
Alternate gene names: NA
Gene position: 2337652-2336696 (Counterclockwise)
Preceding gene: 187736408
Following gene: 187736403
Centisome position: 87.75
GC content: 58.52
Gene sequence:
>957_bases ATGACCGTCTCCTCCGCGTCCGGTAAAGAAATTCACCCTCGTTTGCCCTGGGTGGAGATTGCACGGCTGCTGGCGACGCT GGTGGTTATCATGCAGCACGTCCCTTCCATGGGGTTTCCTCCCAACCAATGGCTGATTGGTCCGGCGCTGGCGACGTTTT TCCTGCTGGCGGGGTATTTTTCCGCCTCCGGCCTTGATGAACAGGGGGCCGGAACGTGGGCGGGGCGCCGCCTGCTGGTT TTGCTGCGGCCTTATCTTTTCTGGTGCGCGGCCTATTGGCTGGCGGCGGGCATGCCTCTTGCCCCTGGTTCTCTGGCTTC CGTGTTTGGGCTGGGAACATGTCCCATGCTGACCCCGATGTGGTTCCTGAGAGACTTGATGATGTTTACCCTGGCTGCGT TTTTGCTCTCCCGTTTCCGTCCAGCTCTTTACGCCTTTGGCCTGTTTTGCCTGTTTCTGCACCGGTGGGACGACTCCCTG GCATGGCCCAGTCCGTACATGTTTGGGGATTTTGCGCTCGGCGTTATGCTGGCGTCCGCCGCACCGGGCTGTCTGAACCG CTGGGGCAACATGCCCCTTGCCGTGCATGGTTCCATTCTTTTAGCCTCCGTGGGTCTTGTCTGGGTAAGCTGTACGGACT CTTTCCTGATTGCGGACGACTCTTTTCCCGGATTGATTGTTCTGGCCTTCCTCAGCTTCGGAATTATTGTAAAGGCCGTC AGCCCCGGCTGGTCGGAAAAGCTGGCCCGGTGGGCGTCCGGCAGCTTTTTCGTGTATTGTTCCCATATTTTTGTTCTGAT AGCCCTGATGGGCGTAGAGAGCTGTTTTCCCTCCCCATGGCCTGCCTGGGCGTGGTGGTGCCTGGTTCCCGCGGTTTACA TGATGGCGCGGAGCGTTTACGTATTCCTCAAACGCTATTTCCCCCGTTCCCTCGTCCTGATGAGCGGGGGAAAATGA
Upstream 100 bases:
>100_bases CATAATACGATGCCTGTGAAGGTTGATAAGGCCGCTTTTCGTCTATAAAATCAATAAAAAATAGTGCTTTTTCAAAACAA TCATCCAGAATGGGGCTGTC
Downstream 100 bases:
>100_bases CCTTTGGAACAACGGACGGAAAGCTCCGCCGGGAGTGTTCCATGTTTACTTTTATGGCACCGGAGAGACGTCATCCTGTT TCTCTCTCCTGGGTTTGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MTVSSASGKEIHPRLPWVEIARLLATLVVIMQHVPSMGFPPNQWLIGPALATFFLLAGYFSASGLDEQGAGTWAGRRLLV LLRPYLFWCAAYWLAAGMPLAPGSLASVFGLGTCPMLTPMWFLRDLMMFTLAAFLLSRFRPALYAFGLFCLFLHRWDDSL AWPSPYMFGDFALGVMLASAAPGCLNRWGNMPLAVHGSILLASVGLVWVSCTDSFLIADDSFPGLIVLAFLSFGIIVKAV SPGWSEKLARWASGSFFVYCSHIFVLIALMGVESCFPSPWPAWAWWCLVPAVYMMARSVYVFLKRYFPRSLVLMSGGK
Sequences:
>Translated_318_residues MTVSSASGKEIHPRLPWVEIARLLATLVVIMQHVPSMGFPPNQWLIGPALATFFLLAGYFSASGLDEQGAGTWAGRRLLV LLRPYLFWCAAYWLAAGMPLAPGSLASVFGLGTCPMLTPMWFLRDLMMFTLAAFLLSRFRPALYAFGLFCLFLHRWDDSL AWPSPYMFGDFALGVMLASAAPGCLNRWGNMPLAVHGSILLASVGLVWVSCTDSFLIADDSFPGLIVLAFLSFGIIVKAV SPGWSEKLARWASGSFFVYCSHIFVLIALMGVESCFPSPWPAWAWWCLVPAVYMMARSVYVFLKRYFPRSLVLMSGGK >Mature_317_residues TVSSASGKEIHPRLPWVEIARLLATLVVIMQHVPSMGFPPNQWLIGPALATFFLLAGYFSASGLDEQGAGTWAGRRLLVL LRPYLFWCAAYWLAAGMPLAPGSLASVFGLGTCPMLTPMWFLRDLMMFTLAAFLLSRFRPALYAFGLFCLFLHRWDDSLA WPSPYMFGDFALGVMLASAAPGCLNRWGNMPLAVHGSILLASVGLVWVSCTDSFLIADDSFPGLIVLAFLSFGIIVKAVS PGWSEKLARWASGSFFVYCSHIFVLIALMGVESCFPSPWPAWAWWCLVPAVYMMARSVYVFLKRYFPRSLVLMSGGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35111; Mature: 34980
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSSASGKEIHPRLPWVEIARLLATLVVIMQHVPSMGFPPNQWLIGPALATFFLLAGYF CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH SASGLDEQGAGTWAGRRLLVLLRPYLFWCAAYWLAAGMPLAPGSLASVFGLGTCPMLTPM HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHH WFLRDLMMFTLAAFLLSRFRPALYAFGLFCLFLHRWDDSLAWPSPYMFGDFALGVMLASA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC APGCLNRWGNMPLAVHGSILLASVGLVWVSCTDSFLIADDSFPGLIVLAFLSFGIIVKAV CCHHHHHHCCCCEEEHHHHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHHHHHHHC SPGWSEKLARWASGSFFVYCSHIFVLIALMGVESCFPSPWPAWAWWCLVPAVYMMARSVY CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH VFLKRYFPRSLVLMSGGK HHHHHHCCHHEEEECCCC >Mature Secondary Structure TVSSASGKEIHPRLPWVEIARLLATLVVIMQHVPSMGFPPNQWLIGPALATFFLLAGYF CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH SASGLDEQGAGTWAGRRLLVLLRPYLFWCAAYWLAAGMPLAPGSLASVFGLGTCPMLTPM HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHH WFLRDLMMFTLAAFLLSRFRPALYAFGLFCLFLHRWDDSLAWPSPYMFGDFALGVMLASA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC APGCLNRWGNMPLAVHGSILLASVGLVWVSCTDSFLIADDSFPGLIVLAFLSFGIIVKAV CCHHHHHHCCCCEEEHHHHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHHHHHHHC SPGWSEKLARWASGSFFVYCSHIFVLIALMGVESCFPSPWPAWAWWCLVPAVYMMARSVY CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH VFLKRYFPRSLVLMSGGK HHHHHHCCHHEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA