Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yejE [H]
Identifier: 187736337
GI number: 187736337
Start: 2254822
End: 2256429
Strand: Reverse
Name: yejE [H]
Synonym: Amuc_1854
Alternate gene names: 187736337
Gene position: 2256429-2254822 (Counterclockwise)
Preceding gene: 187736338
Following gene: 187736336
Centisome position: 84.7
GC content: 55.1
Gene sequence:
>1608_bases ATGGTTAGAAAACTGGCATACCTTTTGGTCATTCTGGCGGTTCTTACTGCCGTGGGAGAGCTGTGCGGGCTGCTCCTGCC CACGTTAAGCTGGCCCTTCACCGTCTCACGGGAAATGAGCATGCTCAACATCGTCTGTACGGACCAGAACAACGGCGGCC TTCTGACGCCTCAGGGGAAATTCCTGTGGTTCGGCTGGGTTTGCGTGCTGGTCATGGGAGGCCTCGGGTTCTGGCTCATG CTGAAAGGCCCCCGGAGGTTCCATCCAACGCCGATCACCAGGCGCCGCATCCAGCGTTTTAAAAGCATCTCCCGCGGTTA CGTATCCCTCCTCATTTTGCTTGTATTGACGCTATTGGCCTGTATGGACCAGTGCCTGGTGGGCAAGCGGGCCCTCCTTG TCGTTCAGGACGGATCCTGGTACTTTCCGGCCATGATGCGCAAAGTATACAAGGGTTCTACATTTGGCCAGACCGGAGAT TTTGCGGATGCGGAAGCCAACTACCGCGAACTGAAAAAACAGGCAGGCCAGCCGGGAAAACCCTCCCTTGTCATCATGCC TCTGGTTCCATACGATCCCACGGGAGATTCCACCAACCCCGGTTCGGAAGCTTTGATGGTGAATGAAGACGGTCTCGTCT GCGAGGCCGGCGGCAAGCCGTATTCCGGTTTGGCCTCCCGTTTGCATAAGGATGAAGAAGCCCTTCCCCACATCAGCTAC AAATTCCGCAAGGGAAAGAAAGTGGACCGGGCCACCGGCTGGCTGGAAGACAGAACGGAGGTGTACAGCGCCACGTATGA AAACAACAACATTGTGGCGGAACATTACAGCGGCCCCGGCACCAAAGAGGAATTCCTGAAACAGACGGATGAACATAAAA TCAGCCGTATCTTCTACCACCCCTCCCCGCCCCTCAAGGGGGGCCACCTGCTTGGCACCAATACCCAGGGGGCGGACATT CTGGCTTATCTGTACGGCGGCCTCCAAGTAAATATGAAAGCCGCACTCTTCTACCTGCCTATCGTATATTTCATCGGCAT CACCTTTGGAATGATGATGGGATACTTCGGCGGCATGTTTGACCTCGGCATGCAGCGCCTCATTGAAATCTTCTCCCAGG TTCCCTTCCTTTTCATCATCATGATTATTTCAGATATGGTTCCCCTTCATATGAAGGGCATGTTCCTGATTATCAGCCTT CTAATCATGTTCGGGTGGATGTCCATGACCTACCAGCTCAGAACCTCCACCATGAAGGAAAAAGCGCGCGACTACGTGGC GGCCGCCCGCGTGCTTGGGGCTTCCACCAGCCGTATTCTCTTCGTTCATATCCTGCCCAACCTAGTCGCCATTCTGGTCA CTCTGGTTCCGTTCAGCGTTTCCGCCCTCATTCTGGCTCTGGCTTCCCTGGACTATCTGGGCTTCGGCCTTCCTGACACA TACGCCAGCTGGGGGCGCCTGCTCAATGACGGACTGGCGGATCTTTCCGCCAGCTGGGTGGTTACCTCCGCCTTTTCCGC CCTGGTGATTACCCTCCTGCTCGTCACCTTTATCGGGGAGGCTGTCCGCGAAGCCTTTGACCCTAAAAAATTCACCACTT ATAAATAA
Upstream 100 bases:
>100_bases GAACGCTGCTGCTTACCTCCTTCCTGATGGTACTGGGCAACCTTCTCTCCGATATCATCGTGGCCGCTGTGGATCCGCGC ATCAAATTTGAATAATACAC
Downstream 100 bases:
>100_bases AAAGACTCCCGCTTTGCCATTTCTTATGCTTAAGCTGTCCACCCTCCTCCGTTCCACCCTTTCTTCCGTGATGCTGTCCC TTCTGTTGACAGCCGGGTCC
Product: binding-protein-dependent transporters inner membrane component
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 535; Mature: 535
Protein sequence:
>535_residues MVRKLAYLLVILAVLTAVGELCGLLLPTLSWPFTVSREMSMLNIVCTDQNNGGLLTPQGKFLWFGWVCVLVMGGLGFWLM LKGPRRFHPTPITRRRIQRFKSISRGYVSLLILLVLTLLACMDQCLVGKRALLVVQDGSWYFPAMMRKVYKGSTFGQTGD FADAEANYRELKKQAGQPGKPSLVIMPLVPYDPTGDSTNPGSEALMVNEDGLVCEAGGKPYSGLASRLHKDEEALPHISY KFRKGKKVDRATGWLEDRTEVYSATYENNNIVAEHYSGPGTKEEFLKQTDEHKISRIFYHPSPPLKGGHLLGTNTQGADI LAYLYGGLQVNMKAALFYLPIVYFIGITFGMMMGYFGGMFDLGMQRLIEIFSQVPFLFIIMIISDMVPLHMKGMFLIISL LIMFGWMSMTYQLRTSTMKEKARDYVAAARVLGASTSRILFVHILPNLVAILVTLVPFSVSALILALASLDYLGFGLPDT YASWGRLLNDGLADLSASWVVTSAFSALVITLLLVTFIGEAVREAFDPKKFTTYK
Sequences:
>Translated_535_residues MVRKLAYLLVILAVLTAVGELCGLLLPTLSWPFTVSREMSMLNIVCTDQNNGGLLTPQGKFLWFGWVCVLVMGGLGFWLM LKGPRRFHPTPITRRRIQRFKSISRGYVSLLILLVLTLLACMDQCLVGKRALLVVQDGSWYFPAMMRKVYKGSTFGQTGD FADAEANYRELKKQAGQPGKPSLVIMPLVPYDPTGDSTNPGSEALMVNEDGLVCEAGGKPYSGLASRLHKDEEALPHISY KFRKGKKVDRATGWLEDRTEVYSATYENNNIVAEHYSGPGTKEEFLKQTDEHKISRIFYHPSPPLKGGHLLGTNTQGADI LAYLYGGLQVNMKAALFYLPIVYFIGITFGMMMGYFGGMFDLGMQRLIEIFSQVPFLFIIMIISDMVPLHMKGMFLIISL LIMFGWMSMTYQLRTSTMKEKARDYVAAARVLGASTSRILFVHILPNLVAILVTLVPFSVSALILALASLDYLGFGLPDT YASWGRLLNDGLADLSASWVVTSAFSALVITLLLVTFIGEAVREAFDPKKFTTYK >Mature_535_residues MVRKLAYLLVILAVLTAVGELCGLLLPTLSWPFTVSREMSMLNIVCTDQNNGGLLTPQGKFLWFGWVCVLVMGGLGFWLM LKGPRRFHPTPITRRRIQRFKSISRGYVSLLILLVLTLLACMDQCLVGKRALLVVQDGSWYFPAMMRKVYKGSTFGQTGD FADAEANYRELKKQAGQPGKPSLVIMPLVPYDPTGDSTNPGSEALMVNEDGLVCEAGGKPYSGLASRLHKDEEALPHISY KFRKGKKVDRATGWLEDRTEVYSATYENNNIVAEHYSGPGTKEEFLKQTDEHKISRIFYHPSPPLKGGHLLGTNTQGADI LAYLYGGLQVNMKAALFYLPIVYFIGITFGMMMGYFGGMFDLGMQRLIEIFSQVPFLFIIMIISDMVPLHMKGMFLIISL LIMFGWMSMTYQLRTSTMKEKARDYVAAARVLGASTSRILFVHILPNLVAILVTLVPFSVSALILALASLDYLGFGLPDT YASWGRLLNDGLADLSASWVVTSAFSALVITLLLVTFIGEAVREAFDPKKFTTYK
Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4239
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788505, Length=230, Percent_Identity=38.695652173913, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1787498, Length=230, Percent_Identity=32.1739130434783, Blast_Score=116, Evalue=4e-27, Organism=Escherichia coli, GI1789964, Length=234, Percent_Identity=31.6239316239316, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1787054, Length=223, Percent_Identity=28.6995515695067, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI1787549, Length=222, Percent_Identity=28.3783783783784, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1787760, Length=227, Percent_Identity=25.1101321585903, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789889, Length=233, Percent_Identity=24.0343347639485, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 59477; Mature: 59477
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRKLAYLLVILAVLTAVGELCGLLLPTLSWPFTVSREMSMLNIVCTDQNNGGLLTPQGK CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEEECCCCCCEECCCCC FLWFGWVCVLVMGGLGFWLMLKGPRRFHPTPITRRRIQRFKSISRGYVSLLILLVLTLLA HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CMDQCLVGKRALLVVQDGSWYFPAMMRKVYKGSTFGQTGDFADAEANYRELKKQAGQPGK HHHHHHCCCCEEEEEECCCEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC PSLVIMPLVPYDPTGDSTNPGSEALMVNEDGLVCEAGGKPYSGLASRLHKDEEALPHISY CCEEEEEECCCCCCCCCCCCCCCEEEECCCCEEECCCCCCHHHHHHHHCCHHHHCCCCHH KFRKGKKVDRATGWLEDRTEVYSATYENNNIVAEHYSGPGTKEEFLKQTDEHKISRIFYH HHHCCCCHHHHHCCHHHHHHHHHEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHEEEEC PSPPLKGGHLLGTNTQGADILAYLYGGLQVNMKAALFYLPIVYFIGITFGMMMGYFGGMF CCCCCCCCEEECCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH DLGMQRLIEIFSQVPFLFIIMIISDMVPLHMKGMFLIISLLIMFGWMSMTYQLRTSTMKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KARDYVAAARVLGASTSRILFVHILPNLVAILVTLVPFSVSALILALASLDYLGFGLPDT HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH YASWGRLLNDGLADLSASWVVTSAFSALVITLLLVTFIGEAVREAFDPKKFTTYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MVRKLAYLLVILAVLTAVGELCGLLLPTLSWPFTVSREMSMLNIVCTDQNNGGLLTPQGK CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEEECCCCCCEECCCCC FLWFGWVCVLVMGGLGFWLMLKGPRRFHPTPITRRRIQRFKSISRGYVSLLILLVLTLLA HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CMDQCLVGKRALLVVQDGSWYFPAMMRKVYKGSTFGQTGDFADAEANYRELKKQAGQPGK HHHHHHCCCCEEEEEECCCEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC PSLVIMPLVPYDPTGDSTNPGSEALMVNEDGLVCEAGGKPYSGLASRLHKDEEALPHISY CCEEEEEECCCCCCCCCCCCCCCEEEECCCCEEECCCCCCHHHHHHHHCCHHHHCCCCHH KFRKGKKVDRATGWLEDRTEVYSATYENNNIVAEHYSGPGTKEEFLKQTDEHKISRIFYH HHHCCCCHHHHHCCHHHHHHHHHEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHEEEEC PSPPLKGGHLLGTNTQGADILAYLYGGLQVNMKAALFYLPIVYFIGITFGMMMGYFGGMF CCCCCCCCEEECCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH DLGMQRLIEIFSQVPFLFIIMIISDMVPLHMKGMFLIISLLIMFGWMSMTYQLRTSTMKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KARDYVAAARVLGASTSRILFVHILPNLVAILVTLVPFSVSALILALASLDYLGFGLPDT HHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH YASWGRLLNDGLADLSASWVVTSAFSALVITLLLVTFIGEAVREAFDPKKFTTYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]