Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is hex [H]
Identifier: 187736302
GI number: 187736302
Start: 2202069
End: 2204255
Strand: Direct
Name: hex [H]
Synonym: Amuc_1815
Alternate gene names: 187736302
Gene position: 2202069-2204255 (Clockwise)
Preceding gene: 187736301
Following gene: 187736304
Centisome position: 82.66
GC content: 55.37
Gene sequence:
>2187_bases ATGAACCGCATGAAGTTCCTTTTATTATCGTTTGCATGGGTGTGCATGGCTTGCGCCGGAGCATGGGGGCAGGATACGGC CCCGTCTTTCCCGGCTAACGGGGCCAATTACAGGCTGTTTCCGGCGGACCGGCCTCCGCTGGTTCCCAAACCCCAGCAGC TGCGCTGGGACGACAGGGCCATTCCCGTGCAGTCCGTACGCATTTTGGCTCCGTCTCCGTCCAGGACTTCCTATCCGGAA CAGATGAAGTTCATTGTTTCCGAATTGAAATCTTTTCTGGCGGAGCACTGCGTGAAGGTGGCTCCGGACGGGACGTTTGC CGTTAAATTCGTCAAGGGGGATGTGAAAGCCGGCACGGAAAATTCCAAGCTGAAGGAGGAGGCTTATTCCCTCCGAGTAA CTTCCGGCGGCGCACTCATTACGGCGATGGATACCAGAGGATTCTATTACGGCATGAAAACGCTGGAGCAGCTTCTTTTG CGCCGCGGCGGGACGACGACCATTGCCGCCTGCGATATCGTGGACTGGCCGGATTTTGAAATCCGCGGATTCATGAACGA TGTGGGACGCAATTACATGCCGCTGCCTCTGATTGCACGGGAGCTGGATTCCATGGCGCAGCTCAAGCTGAATGTTTACC ACTTCCATTTTACGGAGAACCCCGGCTGGCGGCTGGAATCCAAAATTTATCCGGAGCTGAACGCCCCCGAAAATTATACG CGCATGCCTGGCAAGTTTTACACGCAGAAGGAGTTTAAGCAGCTGGTGGAGTACTGCCGCCTGCGCAATATCCTGCTGAT TCCGGAGATGGATATGCCGGGGCACAGCCAGATGTTCCGCAAGGCGCTCAACGTGAAGATGAGCGATGAAAAAGCCACCA AAGCCCTGGTGGCCCTGATCAAGGAGTTGTGTTCCCTGGTTCCCAAGGAGAAAATGCCCATCATCCACATTGGCACGGAC GAGGTGCGCGGCAAGGATGAGCAGGTGAACAATGAGATTCTTAAGGAGTACATCCATGCAGTGGAGTTCTGCGGCCGCAT TCCCATGAGATGGCAGCCCGGCCTGACGCCGAAGGGCTATAACGGCTCCATCCAGCAGTTATGGTCCGGCCGCCAGAACC GTGGCGCATGGCCTACCGACGGAGCGAAGTATGTTGATTCCCTGGAGACTTACCTGAACCACCTTGATCCGTTTGAAACG GCCATGACCATGTATTTCCGCCGGGCATGCCCGTTTCGGAATGCGGAAGGACTGGGCATGATGCTGTGTTCTTTCCCGGA CCTGGAAATTACGGATCCGCGCAACCAAGTTCTTCAGACGCCCGTTTACGCCGGCATGGCGTTCGTTTCCGAACCTTTGT GGAATAATCCCCATGAGAAGGTGCTGGGAGACCCCAACCAGGACGAATATATGAAGTATTTTTCCAATCTGCCCGTGCAG GGGGATCCTCTGCTGAAGGGGTTTGCGGATTACGAGAACCGCGTGCTCGCCATCCGGGACCGTTTTTTCGTGGATAAGGA GTTTAATTACGTACGGCAGGCGAATATTCCCTGGAAATTGCTGGGGCCTATTCCCAACGGCGGTAAGACGGAAAAGGAAT TCGCTCCGGAGGAGGACAACAAGGCAGGGAAGATGAGGGATTCCTACGAGATTGACGGCGTCACCTATGAGTGGTCCGGA GACGATTACACGGGGGCCACCATCATTTTCAAGCATTACTGCGATTTTCCGACGCTGTTCAATGGCGCAAAGATGGGAGC TTATCCCCACAAAAACCACACTTATTACGCGCAGACCTGGATTTATTCCCCCAAGGCGCAGACGGTGCCTTTCTGGATCA GCGGACATACCTGGGCCACGTCCGATTGGCGCAACGGTCCGGCGAGCGTTCCCGGCAAGTGGTTTCATGCGGATCCCAAA TTTTTTGTGAACGGCCGGGAGATTGCCCCCCCGCAATGGAAAAAGCCGCGTAACAGCGGCGTGATGGTGGATGAAAACTA CCATTTCCGGGAGCCTTCCATGGTTCCTCTTAAGAAGGGTTGGAACCGCGTGCTGGTAAAGAGCCCCAGCAACAATTCCG CGCGTCGGTGGATGTTCACATTCGTTCCGGTGCTGGTGAACCCCAAGACGCCCGGCTGCAATGTGAAGGAGTATCCCGGC CTCAAATTTTCCACACGTCCGGAATAG
Upstream 100 bases:
>100_bases CACAGGTTCTGGTCTTTTTGCAAAAAATGCTGCCGGAACCCCGTTTTCCGGCAAGTTGGACACGATAGGTTTGACAGGCA GCTGTTATTGCGGGCGTATT
Downstream 100 bases:
>100_bases AAAATCCCGTGATGAGCATCCGGAGCTGGAATGAGCCGGTTGCAGTATCCGCCATCATCATTAAAAAAGAAGCCGCGCTT CTGGCAAAAGCGCGGCTTCT
Product: Beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Chitobiase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 728; Mature: 728
Protein sequence:
>728_residues MNRMKFLLLSFAWVCMACAGAWGQDTAPSFPANGANYRLFPADRPPLVPKPQQLRWDDRAIPVQSVRILAPSPSRTSYPE QMKFIVSELKSFLAEHCVKVAPDGTFAVKFVKGDVKAGTENSKLKEEAYSLRVTSGGALITAMDTRGFYYGMKTLEQLLL RRGGTTTIAACDIVDWPDFEIRGFMNDVGRNYMPLPLIARELDSMAQLKLNVYHFHFTENPGWRLESKIYPELNAPENYT RMPGKFYTQKEFKQLVEYCRLRNILLIPEMDMPGHSQMFRKALNVKMSDEKATKALVALIKELCSLVPKEKMPIIHIGTD EVRGKDEQVNNEILKEYIHAVEFCGRIPMRWQPGLTPKGYNGSIQQLWSGRQNRGAWPTDGAKYVDSLETYLNHLDPFET AMTMYFRRACPFRNAEGLGMMLCSFPDLEITDPRNQVLQTPVYAGMAFVSEPLWNNPHEKVLGDPNQDEYMKYFSNLPVQ GDPLLKGFADYENRVLAIRDRFFVDKEFNYVRQANIPWKLLGPIPNGGKTEKEFAPEEDNKAGKMRDSYEIDGVTYEWSG DDYTGATIIFKHYCDFPTLFNGAKMGAYPHKNHTYYAQTWIYSPKAQTVPFWISGHTWATSDWRNGPASVPGKWFHADPK FFVNGREIAPPQWKKPRNSGVMVDENYHFREPSMVPLKKGWNRVLVKSPSNNSARRWMFTFVPVLVNPKTPGCNVKEYPG LKFSTRPE
Sequences:
>Translated_728_residues MNRMKFLLLSFAWVCMACAGAWGQDTAPSFPANGANYRLFPADRPPLVPKPQQLRWDDRAIPVQSVRILAPSPSRTSYPE QMKFIVSELKSFLAEHCVKVAPDGTFAVKFVKGDVKAGTENSKLKEEAYSLRVTSGGALITAMDTRGFYYGMKTLEQLLL RRGGTTTIAACDIVDWPDFEIRGFMNDVGRNYMPLPLIARELDSMAQLKLNVYHFHFTENPGWRLESKIYPELNAPENYT RMPGKFYTQKEFKQLVEYCRLRNILLIPEMDMPGHSQMFRKALNVKMSDEKATKALVALIKELCSLVPKEKMPIIHIGTD EVRGKDEQVNNEILKEYIHAVEFCGRIPMRWQPGLTPKGYNGSIQQLWSGRQNRGAWPTDGAKYVDSLETYLNHLDPFET AMTMYFRRACPFRNAEGLGMMLCSFPDLEITDPRNQVLQTPVYAGMAFVSEPLWNNPHEKVLGDPNQDEYMKYFSNLPVQ GDPLLKGFADYENRVLAIRDRFFVDKEFNYVRQANIPWKLLGPIPNGGKTEKEFAPEEDNKAGKMRDSYEIDGVTYEWSG DDYTGATIIFKHYCDFPTLFNGAKMGAYPHKNHTYYAQTWIYSPKAQTVPFWISGHTWATSDWRNGPASVPGKWFHADPK FFVNGREIAPPQWKKPRNSGVMVDENYHFREPSMVPLKKGWNRVLVKSPSNNSARRWMFTFVPVLVNPKTPGCNVKEYPG LKFSTRPE >Mature_728_residues MNRMKFLLLSFAWVCMACAGAWGQDTAPSFPANGANYRLFPADRPPLVPKPQQLRWDDRAIPVQSVRILAPSPSRTSYPE QMKFIVSELKSFLAEHCVKVAPDGTFAVKFVKGDVKAGTENSKLKEEAYSLRVTSGGALITAMDTRGFYYGMKTLEQLLL RRGGTTTIAACDIVDWPDFEIRGFMNDVGRNYMPLPLIARELDSMAQLKLNVYHFHFTENPGWRLESKIYPELNAPENYT RMPGKFYTQKEFKQLVEYCRLRNILLIPEMDMPGHSQMFRKALNVKMSDEKATKALVALIKELCSLVPKEKMPIIHIGTD EVRGKDEQVNNEILKEYIHAVEFCGRIPMRWQPGLTPKGYNGSIQQLWSGRQNRGAWPTDGAKYVDSLETYLNHLDPFET AMTMYFRRACPFRNAEGLGMMLCSFPDLEITDPRNQVLQTPVYAGMAFVSEPLWNNPHEKVLGDPNQDEYMKYFSNLPVQ GDPLLKGFADYENRVLAIRDRFFVDKEFNYVRQANIPWKLLGPIPNGGKTEKEFAPEEDNKAGKMRDSYEIDGVTYEWSG DDYTGATIIFKHYCDFPTLFNGAKMGAYPHKNHTYYAQTWIYSPKAQTVPFWISGHTWATSDWRNGPASVPGKWFHADPK FFVNGREIAPPQWKKPRNSGVMVDENYHFREPSMVPLKKGWNRVLVKSPSNNSARRWMFTFVPVLVNPKTPGCNVKEYPG LKFSTRPE
Specific function: Hydrolysis of terminal, non-reducing N-acetyl-beta-D- glucosamine residues in chitobiose and higher analogs, and in glycoproteins [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=227, Percent_Identity=29.9559471365639, Blast_Score=106, Evalue=1e-22, Organism=Homo sapiens, GI189181666, Length=151, Percent_Identity=36.4238410596026, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17569815, Length=216, Percent_Identity=28.7037037037037, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI24657468, Length=158, Percent_Identity=36.0759493670886, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI17647501, Length=158, Percent_Identity=36.0759493670886, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI281365639, Length=158, Percent_Identity=36.0759493670886, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24657474, Length=158, Percent_Identity=36.0759493670886, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI17933586, Length=219, Percent_Identity=29.2237442922374, Blast_Score=82, Evalue=9e-16, Organism=Drosophila melanogaster, GI24653074, Length=193, Percent_Identity=29.0155440414508, Blast_Score=79, Evalue=2e-14, Organism=Drosophila melanogaster, GI45551090, Length=193, Percent_Identity=29.0155440414508, Blast_Score=78, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 83362; Mature: 83362
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRMKFLLLSFAWVCMACAGAWGQDTAPSFPANGANYRLFPADRPPLVPKPQQLRWDDRA CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC IPVQSVRILAPSPSRTSYPEQMKFIVSELKSFLAEHCVKVAPDGTFAVKFVKGDVKAGTE CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCC NSKLKEEAYSLRVTSGGALITAMDTRGFYYGMKTLEQLLLRRGGTTTIAACDIVDWPDFE CHHHHHHHEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH IRGFMNDVGRNYMPLPLIARELDSMAQLKLNVYHFHFTENPGWRLESKIYPELNAPENYT HHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEEEECCCCCEECCEECCCCCCCCCCC RMPGKFYTQKEFKQLVEYCRLRNILLIPEMDMPGHSQMFRKALNVKMSDEKATKALVALI CCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCEECHHHHHHHHHHHH KELCSLVPKEKMPIIHIGTDEVRGKDEQVNNEILKEYIHAVEFCGRIPMRWQPGLTPKGY HHHHHHCCCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC NGSIQQLWSGRQNRGAWPTDGAKYVDSLETYLNHLDPFETAMTMYFRRACPFRNAEGLGM CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEE MLCSFPDLEITDPRNQVLQTPVYAGMAFVSEPLWNNPHEKVLGDPNQDEYMKYFSNLPVQ EEECCCCCEECCCHHHHHHCHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHCCCCC GDPLLKGFADYENRVLAIRDRFFVDKEFNYVRQANIPWKLLGPIPNGGKTEKEFAPEEDN CCHHHHHHHHHCCCEEEEECCEEECCCCCHHHCCCCCEEEECCCCCCCCCCHHCCCCCCC KAGKMRDSYEIDGVTYEWSGDDYTGATIIFKHYCDFPTLFNGAKMGAYPHKNHTYYAQTW CCCCCCCCEEECCEEEEECCCCCCCCEEEEEHHCCCCHHHCCCCCCCCCCCCCEEEEEEE IYSPKAQTVPFWISGHTWATSDWRNGPASVPGKWFHADPKFFVNGREIAPPQWKKPRNSG EECCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCC VMVDENYHFREPSMVPLKKGWNRVLVKSPSNNSARRWMFTFVPVLVNPKTPGCNVKEYPG EEECCCCCCCCCCCCHHHCCCCEEEEECCCCCCHHEEEEEEEEEEECCCCCCCCCCCCCC LKFSTRPE CCCCCCCC >Mature Secondary Structure MNRMKFLLLSFAWVCMACAGAWGQDTAPSFPANGANYRLFPADRPPLVPKPQQLRWDDRA CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC IPVQSVRILAPSPSRTSYPEQMKFIVSELKSFLAEHCVKVAPDGTFAVKFVKGDVKAGTE CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCC NSKLKEEAYSLRVTSGGALITAMDTRGFYYGMKTLEQLLLRRGGTTTIAACDIVDWPDFE CHHHHHHHEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH IRGFMNDVGRNYMPLPLIARELDSMAQLKLNVYHFHFTENPGWRLESKIYPELNAPENYT HHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEEEECCCCCEECCEECCCCCCCCCCC RMPGKFYTQKEFKQLVEYCRLRNILLIPEMDMPGHSQMFRKALNVKMSDEKATKALVALI CCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCEECHHHHHHHHHHHH KELCSLVPKEKMPIIHIGTDEVRGKDEQVNNEILKEYIHAVEFCGRIPMRWQPGLTPKGY HHHHHHCCCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC NGSIQQLWSGRQNRGAWPTDGAKYVDSLETYLNHLDPFETAMTMYFRRACPFRNAEGLGM CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEE MLCSFPDLEITDPRNQVLQTPVYAGMAFVSEPLWNNPHEKVLGDPNQDEYMKYFSNLPVQ EEECCCCCEECCCHHHHHHCHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHCCCCC GDPLLKGFADYENRVLAIRDRFFVDKEFNYVRQANIPWKLLGPIPNGGKTEKEFAPEEDN CCHHHHHHHHHCCCEEEEECCEEECCCCCHHHCCCCCEEEECCCCCCCCCCHHCCCCCCC KAGKMRDSYEIDGVTYEWSGDDYTGATIIFKHYCDFPTLFNGAKMGAYPHKNHTYYAQTW CCCCCCCCEEECCEEEEECCCCCCCCEEEEEHHCCCCHHHCCCCCCCCCCCCCEEEEEEE IYSPKAQTVPFWISGHTWATSDWRNGPASVPGKWFHADPKFFVNGREIAPPQWKKPRNSG EECCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCC VMVDENYHFREPSMVPLKKGWNRVLVKSPSNNSARRWMFTFVPVLVNPKTPGCNVKEYPG EEECCCCCCCCCCCCHHHCCCCEEEEECCCCCCHHEEEEEEEEEEECCCCCCCCCCCCCC LKFSTRPE CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8341694 [H]