Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736284
Identifier: 187736284
GI number: 187736284
Start: 2184205
End: 2185077
Strand: Direct
Name: 187736284
Synonym: Amuc_1797
Alternate gene names: NA
Gene position: 2184205-2185077 (Clockwise)
Preceding gene: 187736283
Following gene: 187736285
Centisome position: 81.99
GC content: 54.64
Gene sequence:
>873_bases ATGACCAAGAGAATGATTAAAAATGCTTCCTACGAAGGGGAACGTCCCCTGTTCGCTTCCCGCCATCTTAGGCTGGAAGA CGTCATTATTTATCCGGGGGAATCCGCCCTGAAGGAATGTTCCGACATTGAAGCTGTGCGGTGCGAGTTCCGGGGGAAGT ACCCTTTCTGGCACAATGACGGGCTGCTGGTGGAACATTGCCTGTTCAGGGAAGGCGCCCGGGCCGCCATCTGGTATTCC CGGAATCTGCACATGAAGGATACCCGCGTGGAAGCGCCCAAGATGTTCCGTGATATGGACGGGATGGTTCTGGAGAACGT CGTTCTGACGGATGCTCTGGAATGCTGCTGGCACTGCCGGAATGCGAAGCTTCGCGGCGTGCAGGCGGAGCATGGGGATT ACCTGTTCATGCACGGGGAGAATATAGATGTTGACGGCTTCCGCCTGAACGGAAATTACTCTTTCCAATATTGCAGGAAT GTGGTGATACGGAATGCGGAAATCCATTCCAAGGACGCTTTCTGGAATACGGAGGACGTGACGGTGTACGATTCCGTGGT GGACGGGGAATATCTGGGCTGGCATTCCAGGAACCTTCGTCTGGTGAATTGCCGCATTTCCGGCACGCAGGCGTTGTGCT ACGCGGAAAACCTGGTTCTGGAGAATTGCACGCTCGGAGAGGATGCGGATCTCTGCTTTGAGTATTCCTCCGTGCATGCG GAAATCAAGGGGCGTGTGCACAGCGTCAAAAATCCGCGCAGTGGCCGCATTGTTGCGGAAGAGTACGGGGATATTATTCT GGACGAGCATTGCAAGGCTCCTGCCAATTGCTCCATTGAAACGGGAAAAGCCCAATCCGGAGAAGCCGCATGA
Upstream 100 bases:
>100_bases TACGCGGCCGGCGTCCTTTCCCTTCTTTTTCCGGAATCCGGCCATCGCCGTTTAAAAGGCACACCATGAAAAACAACAGA CTTTTTATCAAATCATCGCC
Downstream 100 bases:
>100_bases AGTACGATTTTGATACTGTTGTTCCGCGCCGCGGCACGAATTCCTACAAGTGGGATTCCATGCCCCGGGAGGATATTCTG CCCATGTGGGTGGCAGACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTKRMIKNASYEGERPLFASRHLRLEDVIIYPGESALKECSDIEAVRCEFRGKYPFWHNDGLLVEHCLFREGARAAIWYS RNLHMKDTRVEAPKMFRDMDGMVLENVVLTDALECCWHCRNAKLRGVQAEHGDYLFMHGENIDVDGFRLNGNYSFQYCRN VVIRNAEIHSKDAFWNTEDVTVYDSVVDGEYLGWHSRNLRLVNCRISGTQALCYAENLVLENCTLGEDADLCFEYSSVHA EIKGRVHSVKNPRSGRIVAEEYGDIILDEHCKAPANCSIETGKAQSGEAA
Sequences:
>Translated_290_residues MTKRMIKNASYEGERPLFASRHLRLEDVIIYPGESALKECSDIEAVRCEFRGKYPFWHNDGLLVEHCLFREGARAAIWYS RNLHMKDTRVEAPKMFRDMDGMVLENVVLTDALECCWHCRNAKLRGVQAEHGDYLFMHGENIDVDGFRLNGNYSFQYCRN VVIRNAEIHSKDAFWNTEDVTVYDSVVDGEYLGWHSRNLRLVNCRISGTQALCYAENLVLENCTLGEDADLCFEYSSVHA EIKGRVHSVKNPRSGRIVAEEYGDIILDEHCKAPANCSIETGKAQSGEAA >Mature_289_residues TKRMIKNASYEGERPLFASRHLRLEDVIIYPGESALKECSDIEAVRCEFRGKYPFWHNDGLLVEHCLFREGARAAIWYSR NLHMKDTRVEAPKMFRDMDGMVLENVVLTDALECCWHCRNAKLRGVQAEHGDYLFMHGENIDVDGFRLNGNYSFQYCRNV VIRNAEIHSKDAFWNTEDVTVYDSVVDGEYLGWHSRNLRLVNCRISGTQALCYAENLVLENCTLGEDADLCFEYSSVHAE IKGRVHSVKNPRSGRIVAEEYGDIILDEHCKAPANCSIETGKAQSGEAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33098; Mature: 32966
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRMIKNASYEGERPLFASRHLRLEDVIIYPGESALKECSDIEAVRCEFRGKYPFWHND CCCHHHCCCCCCCCCCCHHHCCCEEEEEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCC GLLVEHCLFREGARAAIWYSRNLHMKDTRVEAPKMFRDMDGMVLENVVLTDALECCWHCR CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHC NAKLRGVQAEHGDYLFMHGENIDVDGFRLNGNYSFQYCRNVVIRNAEIHSKDAFWNTEDV CCEEECEEECCCCEEEEECCCCCCCCEEECCCCCHHHHHHHHEECCEECCCCCCCCCCCE TVYDSVVDGEYLGWHSRNLRLVNCRISGTQALCYAENLVLENCTLGEDADLCFEYSSVHA EEEEEECCCCEECEECCCEEEEEEEECCCEEEEEECCEEEECCCCCCCCHHEEEHHHHHE EIKGRVHSVKNPRSGRIVAEEYGDIILDEHCKAPANCSIETGKAQSGEAA EECCCEECCCCCCCCCEEHHHCCCEEEHHCCCCCCCCEEECCCCCCCCCC >Mature Secondary Structure TKRMIKNASYEGERPLFASRHLRLEDVIIYPGESALKECSDIEAVRCEFRGKYPFWHND CCHHHCCCCCCCCCCCHHHCCCEEEEEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCC GLLVEHCLFREGARAAIWYSRNLHMKDTRVEAPKMFRDMDGMVLENVVLTDALECCWHCR CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHC NAKLRGVQAEHGDYLFMHGENIDVDGFRLNGNYSFQYCRNVVIRNAEIHSKDAFWNTEDV CCEEECEEECCCCEEEEECCCCCCCCEEECCCCCHHHHHHHHEECCEECCCCCCCCCCCE TVYDSVVDGEYLGWHSRNLRLVNCRISGTQALCYAENLVLENCTLGEDADLCFEYSSVHA EEEEEECCCCEECEECCCEEEEEEEECCCEEEEEECCEEEECCCCCCCCHHEEEHHHHHE EIKGRVHSVKNPRSGRIVAEEYGDIILDEHCKAPANCSIETGKAQSGEAA EECCCEECCCCCCCCCEEHHHCCCEEEHHCCCCCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA