Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is sucD [H]
Identifier: 187736199
GI number: 187736199
Start: 2080685
End: 2081572
Strand: Reverse
Name: sucD [H]
Synonym: Amuc_1712
Alternate gene names: 187736199
Gene position: 2081572-2080685 (Counterclockwise)
Preceding gene: 187736200
Following gene: 187736194
Centisome position: 78.13
GC content: 58.22
Gene sequence:
>888_bases ATGACATCTCTCATTGACAAGAACACTCGTCTGGTCGTGCAAGGCATCACCGGCAGCGCCGGCGCATTCCACGCCAAAAA CTGCATGGACTTCGGCACCAACGTCGTCGCCGGCGTGACCCCCGGCAAGGGCGGCCAGCTCTTTGAAGGCAAGGTCCCCG TCTTCGATACTGTAGCGGAAGCCAAAAAGGCCACGGACTGCAACGCCTCCATGATCTTCGTTCCCCCACCCTTCGCTGCG GACGCCATCATGGAAGCCGCGGACGCGGGCGTGAAGCTCATCGTCTGCATCACGGAAGGTATTCCTGTGCAGGACATGCA GAAGGTGAAAACTTTCCTGAAGGACAAGGACGTGACTCTCATCGGCCCGAACTGCCCAGGAATTGTCAATCCTTCCGCCA ACTGCAAGATCGGCATCATGCCGGCCTACATTTTCAAACCCGGCAGAATCGGTATTGTCTCCCGTTCCGGAACGCTTACC TATGAAGCCGTCTGGCAGGTTACCAACATGGGCCTTGGCCAGAGCATGTGCATCGGCATCGGCGGCGACCCTGTCCATGG CATGACCCAGCAGCAGGCCGTGCAATTCTTCACGGAAGACCCGAACACGGACGCCTTCATCATGATTGGCGAAATCGGCG GTTCCGAAGAAGAAGAAGCTGCTGAATGGATCAAGAACAACTGCAAAAAACCTGTTGCCGCGTTCATCGCAGGAGCCACG GCGCCCAAGGGCCGCCGCATGGGCCATGCAGGAGCCATCGTTGCCGGAGGCAAAGGTACTGCCGCCGCTAAGCAGGAAGC CCTGAAGAACGCCGGTATTGTAGTTGCCAAGACACCGGCTCAGATGGGTGCCGCCCTGGCGGAAGCCATGAAAAACAAGG GGATGTAA
Upstream 100 bases:
>100_bases CGCAGACAGCGGCATCGCCATCATCCCTGCCGACAACCTGGACGAAGCCGCCCAGAAAGCGGTGGCAGCAGTCAAATAAC CCTCACTATTTATTACGACA
Downstream 100 bases:
>100_bases CCCCCCCCTCTTTTTCACCTTTTCATATCCAGCGCCTTCCCTTGCCGGAAGGCGCTTTTTTTATGATAAAACGGAGTTGA CTACATCACGCGGATTTTAT
Product: succinyl-CoA synthetase, alpha subunit
Products: NA
Alternate protein names: Succinyl-CoA synthetase subunit alpha; SCS-alpha; Vegetative protein 239; VEG239 [H]
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MTSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAEAKKATDCNASMIFVPPPFAA DAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTLIGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLT YEAVWQVTNMGLGQSMCIGIGGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM
Sequences:
>Translated_295_residues MTSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAEAKKATDCNASMIFVPPPFAA DAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTLIGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLT YEAVWQVTNMGLGQSMCIGIGGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM >Mature_294_residues TSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAEAKKATDCNASMIFVPPPFAAD AIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTLIGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLTY EAVWQVTNMGLGQSMCIGIGGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGATA PKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM
Specific function: Unknown
COG id: COG0074
COG function: function code C; Succinyl-CoA synthetase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the succinate/malate CoA ligase alpha subunit family [H]
Homologues:
Organism=Homo sapiens, GI109452591, Length=296, Percent_Identity=56.4189189189189, Blast_Score=280, Evalue=2e-75, Organism=Homo sapiens, GI38569421, Length=319, Percent_Identity=29.153605015674, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI38569423, Length=319, Percent_Identity=29.153605015674, Blast_Score=102, Evalue=5e-22, Organism=Escherichia coli, GI1786949, Length=291, Percent_Identity=57.3883161512027, Blast_Score=334, Evalue=4e-93, Organism=Caenorhabditis elegans, GI17553126, Length=292, Percent_Identity=56.5068493150685, Blast_Score=297, Evalue=3e-81, Organism=Caenorhabditis elegans, GI17550194, Length=294, Percent_Identity=54.0816326530612, Blast_Score=289, Evalue=1e-78, Organism=Caenorhabditis elegans, GI17557344, Length=285, Percent_Identity=28.7719298245614, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17551266, Length=283, Percent_Identity=28.2685512367491, Blast_Score=89, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6324716, Length=293, Percent_Identity=50.1706484641638, Blast_Score=272, Evalue=5e-74, Organism=Drosophila melanogaster, GI21356559, Length=291, Percent_Identity=51.5463917525773, Blast_Score=287, Evalue=5e-78, Organism=Drosophila melanogaster, GI28574296, Length=293, Percent_Identity=52.901023890785, Blast_Score=275, Evalue=2e-74, Organism=Drosophila melanogaster, GI281363475, Length=277, Percent_Identity=27.7978339350181, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI281363473, Length=277, Percent_Identity=27.7978339350181, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI281363477, Length=277, Percent_Identity=27.7978339350181, Blast_Score=87, Evalue=1e-17,
Paralogues:
None
Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017440 - InterPro: IPR003781 - InterPro: IPR005810 - InterPro: IPR005811 - InterPro: IPR016040 - InterPro: IPR016102 [H]
Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]
EC number: =6.2.1.5 [H]
Molecular weight: Translated: 30574; Mature: 30443
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: PS01216 SUCCINYL_COA_LIG_1 ; PS00399 SUCCINYL_COA_LIG_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAE CCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEEECCCCHHHHHHH AKKATDCNASMIFVPPPFAADAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTL HHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE IGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLTYEAVWQVTNMGLGQSMCIGI ECCCCCCCCCCCCCCEEEEEEHEEECCCCEEEEECCCCEEHHHHHHHHCCCCCCEEEEEC GGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT CCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCC APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM CCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCC >Mature Secondary Structure TSLIDKNTRLVVQGITGSAGAFHAKNCMDFGTNVVAGVTPGKGGQLFEGKVPVFDTVAE CCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEEECCCCHHHHHHH AKKATDCNASMIFVPPPFAADAIMEAADAGVKLIVCITEGIPVQDMQKVKTFLKDKDVTL HHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE IGPNCPGIVNPSANCKIGIMPAYIFKPGRIGIVSRSGTLTYEAVWQVTNMGLGQSMCIGI ECCCCCCCCCCCCCCEEEEEEHEEECCCCEEEEECCCCEEHHHHHHHHCCCCCCEEEEEC GGDPVHGMTQQQAVQFFTEDPNTDAFIMIGEIGGSEEEEAAEWIKNNCKKPVAAFIAGAT CCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCC APKGRRMGHAGAIVAGGKGTAAAKQEALKNAGIVVAKTPAQMGAALAEAMKNKGM CCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]