Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is gspD [C]
Identifier: 187736127
GI number: 187736127
Start: 1979170
End: 1981671
Strand: Direct
Name: gspD [C]
Synonym: Amuc_1638
Alternate gene names: 187736127
Gene position: 1979170-1981671 (Clockwise)
Preceding gene: 187736126
Following gene: 187736128
Centisome position: 74.29
GC content: 57.11
Gene sequence:
>2502_bases ATGTCTGCCATTCAGCAAATTGCCATGGCGCTTGCCGTTGCCGGTATTGGAGCCGGCCAGGGGCTGGCCCAGGAGGGGGC AGGGGCCGCACGCCGGGCAGCAGCCCGGATGGAAGAGCAGGCTCAGGCTTCCATGCTGCTGTTAGGGCAGGCGCGTCAGC AATATTCCGAGGGCAAGTACCAGGAAGCTCTGGACAATTACCGCAGAAGCCTGACTGCGCTGCCCAAATCCCCCAATATG GAGAAGCGCCGCCGTTTCCTGGAAACCAGCATCGCGGATGCCAGTGTGGCTGTGGCTCAGGAATATATCAAGGCGGGGCG TTACGATGAGGCCGTCAAGTTGCTGGAAGATGCCCTGAAATCCACTCCGGACCATGCCTTGGCCAGGCGCACGTTGGAAA TAGCCCGCGACCCGGTGCGTACGAATCCGGCATTGTCTCCGGAACACGTAAAAAATGTAGAGGAAGTCAACCGTCTGCTT CACCTGGCTTTCGGCTATTATGAACTGGGCCAGTATGATGCGGCCCTGAAGGAATTTACGTCCGTCCTTAAGACGGACCC TTACAATACGGCGGCGCGGCGCGGCATGGAACTGGTTAACCGCGCCAGAACCGCCTATTTTAGCGCTGCCAGGGATGAAA CCCGCAGCAGTGCCCTGGCGGATGTTTCCAGACAGTGGGAGATGCCCGTTCCTTTGACGGAAACACCGGAGGAACCCGCT TCATTTTCCCGGCCGCTGGATAACCCGGTGGTGAATGTGGACCAGAAACTAGGCATGATCCGCCTGCCCCGTGTGCAGCT GGATGGAGCGACGGTGCAGGAAGCCGTGGACTATCTGCGCAGCCAGGCCAGGACGCATGATGCCACGGCCATGACTGCGG CGGAACGCGGCGTGAATATTTCCGTGGATCCCGGTCCTGCAGACAGCGTTTCCGCCAGGGACGCCGCCGCCAAGAGAATT ACGCTTAATCTTCAGAATGTACCTCTTCGTGAGGCCCTGGAATACGTGGCGCGCGCATCCGGCCTTATTCTGCGGACAAA TGCCTTTGGTGCGGAACTGGTATCCAGTTCAGACGGAACTTCCTACATGGTCACCAAGTCCATTACCCTTCCGCCGGGCT TCTTTTCCGGATTGTCGGAGGACTCTGGCGCCGAAAATTCAGACCCCTTCAGTTCCGGTGATTCCGGTTCTTCCGGCATG ACCCTGAAACGGGTGGATCCGCAAAAGGCGCTGGCTTCCATGGGGGTGAAATTCCCGGAAGGCAGTTTCATTAAATACAA CTCGGGCAACTCCACTCTTCTTTTCCATGGCACGCCCAGAGATTTGAGCATGCTGGAGGAGCTGGTAGCGGCCAGGACTG CGGAACAGCCCCTCCAGGTGGTGGTCAGCGCGACCTTTCTGGAAGTCAATCAGACGGACTTGGAGGAATTGGGCTTTAAC TGGATCGTCAATCTGAACCTGGACCCTACCAAGTGGTTCATGGGCGGCGCGGGAACCGATAAAAATGACTATAACAATTC CGTGCTGGACAGCGCCGCCAATGTGGCCGGAGCCGTCGCTCCCGCAGGAGTGGTGGGCGGGCTGCGTTCCGGCAACCAGG TTTTTACGGAAGATAGCATTGACAGCATGATAGAACGCGGCACTTCCGCCAGAAGTTCTGATGCGACCTATGTTCCCGGC GGCGCTCCCAGCATCGTCACTCTGCGCGGCATGTGGAGTCACGCGGATATCACGATGATTATGCGCGGCCTGAGCCAGAA AAAAGGCACAGACATTATGCAGCATCCTTCCGTGATTGTGCGCCCCGGTGAAAAAGCCACCTTTTTCAGCGGCAGGGAAC TGATTTACCCTACGGAATATGATCCGCCTGAAGTTCCCAACAGCACGGGCAATAATAATGACTGGGGCGACAATGACAAT AACGGCGGCGGTATTCCGGTCATGCCCATGACTCCCGCCCATCCCTCTGCCTTTGAAACCAGGCAGCTCGGCACGATCTT CAATGTGGAAGTGACCGGCATCAGCGATGACAAATCCATCGTGGAAATGACCGTAGTGCCGGAAATCGTGGATTTTGACG GTTTCATCAACTACGGCACGTCGCTTTTCGTTCCCATGGTCTCCCAGGAAAAGGACGCAAAGGAAGAAGTCGTCATGGTG AAAACTTCAGACAACTTCATTCTTCAGCCCGTGTTTTCCACGCGGCGCCTGACCGCTCCGGTGCGCATAGCCACCGGCAA TACGCTCGTCATCGGCGCCTTGAAAAAATCCACTTCCATTACGTATGAGGATAAAATTCCCGTTCTGGGGGATATTCCCT GGGTGGGGCGTCTTTTCCGTTCCAAGGGGTCCAAGGAACAGCGCAAGGCCATCATCATCATGGTAAAGGCGGAAGTGGTG GATCCGGGCGGCAAGAAGCTTTATACGCCGGATACTTCCATTCCGGACGATGAGGTCCCGGCAGGGGACGCTTCGCTCCC CGCCCTCAGCAATGCCCAGTAA
Upstream 100 bases:
>100_bases GCCGATATTTTTTACTCTGCTGGGCGTTTTTATGATGACGGGCGGTTTTTAATTCGGTATAGTCCCGGAAATTCCTATGA CTAGACGTTTCCCTCACTCC
Downstream 100 bases:
>100_bases CCTTTAACCGGATCAAGACCATTGAAAAACAGCGGTTCCGATTTTGAGTCTTCTCCGCCCCAGGGGGCTGATAATATCAT GCGTCAGCTGCATGCGTCGG
Product: type II and III secretion system protein
Products: NA
Alternate protein names: Bacterial Type II And III Secretion System Protein
Number of amino acids: Translated: 833; Mature: 832
Protein sequence:
>833_residues MSAIQQIAMALAVAGIGAGQGLAQEGAGAARRAAARMEEQAQASMLLLGQARQQYSEGKYQEALDNYRRSLTALPKSPNM EKRRRFLETSIADASVAVAQEYIKAGRYDEAVKLLEDALKSTPDHALARRTLEIARDPVRTNPALSPEHVKNVEEVNRLL HLAFGYYELGQYDAALKEFTSVLKTDPYNTAARRGMELVNRARTAYFSAARDETRSSALADVSRQWEMPVPLTETPEEPA SFSRPLDNPVVNVDQKLGMIRLPRVQLDGATVQEAVDYLRSQARTHDATAMTAAERGVNISVDPGPADSVSARDAAAKRI TLNLQNVPLREALEYVARASGLILRTNAFGAELVSSSDGTSYMVTKSITLPPGFFSGLSEDSGAENSDPFSSGDSGSSGM TLKRVDPQKALASMGVKFPEGSFIKYNSGNSTLLFHGTPRDLSMLEELVAARTAEQPLQVVVSATFLEVNQTDLEELGFN WIVNLNLDPTKWFMGGAGTDKNDYNNSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPG GAPSIVTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEVPNSTGNNNDWGDNDN NGGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTVVPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMV KTSDNFILQPVFSTRRLTAPVRIATGNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVV DPGGKKLYTPDTSIPDDEVPAGDASLPALSNAQ
Sequences:
>Translated_833_residues MSAIQQIAMALAVAGIGAGQGLAQEGAGAARRAAARMEEQAQASMLLLGQARQQYSEGKYQEALDNYRRSLTALPKSPNM EKRRRFLETSIADASVAVAQEYIKAGRYDEAVKLLEDALKSTPDHALARRTLEIARDPVRTNPALSPEHVKNVEEVNRLL HLAFGYYELGQYDAALKEFTSVLKTDPYNTAARRGMELVNRARTAYFSAARDETRSSALADVSRQWEMPVPLTETPEEPA SFSRPLDNPVVNVDQKLGMIRLPRVQLDGATVQEAVDYLRSQARTHDATAMTAAERGVNISVDPGPADSVSARDAAAKRI TLNLQNVPLREALEYVARASGLILRTNAFGAELVSSSDGTSYMVTKSITLPPGFFSGLSEDSGAENSDPFSSGDSGSSGM TLKRVDPQKALASMGVKFPEGSFIKYNSGNSTLLFHGTPRDLSMLEELVAARTAEQPLQVVVSATFLEVNQTDLEELGFN WIVNLNLDPTKWFMGGAGTDKNDYNNSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPG GAPSIVTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEVPNSTGNNNDWGDNDN NGGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTVVPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMV KTSDNFILQPVFSTRRLTAPVRIATGNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVV DPGGKKLYTPDTSIPDDEVPAGDASLPALSNAQ >Mature_832_residues SAIQQIAMALAVAGIGAGQGLAQEGAGAARRAAARMEEQAQASMLLLGQARQQYSEGKYQEALDNYRRSLTALPKSPNME KRRRFLETSIADASVAVAQEYIKAGRYDEAVKLLEDALKSTPDHALARRTLEIARDPVRTNPALSPEHVKNVEEVNRLLH LAFGYYELGQYDAALKEFTSVLKTDPYNTAARRGMELVNRARTAYFSAARDETRSSALADVSRQWEMPVPLTETPEEPAS FSRPLDNPVVNVDQKLGMIRLPRVQLDGATVQEAVDYLRSQARTHDATAMTAAERGVNISVDPGPADSVSARDAAAKRIT LNLQNVPLREALEYVARASGLILRTNAFGAELVSSSDGTSYMVTKSITLPPGFFSGLSEDSGAENSDPFSSGDSGSSGMT LKRVDPQKALASMGVKFPEGSFIKYNSGNSTLLFHGTPRDLSMLEELVAARTAEQPLQVVVSATFLEVNQTDLEELGFNW IVNLNLDPTKWFMGGAGTDKNDYNNSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPGG APSIVTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEVPNSTGNNNDWGDNDNN GGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTVVPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMVK TSDNFILQPVFSTRRLTAPVRIATGNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVD PGGKKLYTPDTSIPDDEVPAGDASLPALSNAQ
Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]
COG id: COG4964
COG function: function code U; Flp pilus assembly protein, secretin CpaC
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89970; Mature: 89839
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00584 PFKB_KINASES_2 ; PS00800 PECTINESTERASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAIQQIAMALAVAGIGAGQGLAQEGAGAARRAAARMEEQAQASMLLLGQARQQYSEGKY CHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH QEALDNYRRSLTALPKSPNMEKRRRFLETSIADASVAVAQEYIKAGRYDEAVKLLEDALK HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH STPDHALARRTLEIARDPVRTNPALSPEHVKNVEEVNRLLHLAFGYYELGQYDAALKEFT CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVLKTDPYNTAARRGMELVNRARTAYFSAARDETRSSALADVSRQWEMPVPLTETPEEPA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH SFSRPLDNPVVNVDQKLGMIRLPRVQLDGATVQEAVDYLRSQARTHDATAMTAAERGVNI HHCCCCCCCCCCHHHHCCEEECCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEE SVDPGPADSVSARDAAAKRITLNLQNVPLREALEYVARASGLILRTNAFGAELVSSSDGT EECCCCCCCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCHHHHCCCCCC SYMVTKSITLPPGFFSGLSEDSGAENSDPFSSGDSGSSGMTLKRVDPQKALASMGVKFPE EEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCC GSFIKYNSGNSTLLFHGTPRDLSMLEELVAARTAEQPLQVVVSATFLEVNQTDLEELGFN CCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHCCCE WIVNLNLDPTKWFMGGAGTDKNDYNNSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSI EEEEECCCCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCEEECHHHH DSMIERGTSARSSDATYVPGGAPSIVTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIV HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCEEE RPGEKATFFSGRELIYPTEYDPPEVPNSTGNNNDWGDNDNNGGGIPVMPMTPAHPSAFET ECCCCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH RQLGTIFNVEVTGISDDKSIVEMTVVPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMV HHCCEEEEEEEECCCCCCCEEEEEECCHHHCCCCHHHCCCEEEEEECCCCCCCCCCEEEE KTSDNFILQPVFSTRRLTAPVRIATGNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFR EECCCEEEEECCCCCEECCCEEEECCCEEEEEEECCCCCEEECCCCCCEECCHHHHHHHH SKGSKEQRKAIIIMVKAEVVDPGGKKLYTPDTSIPDDEVPAGDASLPALSNAQ CCCCCCCCCEEEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SAIQQIAMALAVAGIGAGQGLAQEGAGAARRAAARMEEQAQASMLLLGQARQQYSEGKY HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH QEALDNYRRSLTALPKSPNMEKRRRFLETSIADASVAVAQEYIKAGRYDEAVKLLEDALK HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH STPDHALARRTLEIARDPVRTNPALSPEHVKNVEEVNRLLHLAFGYYELGQYDAALKEFT CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVLKTDPYNTAARRGMELVNRARTAYFSAARDETRSSALADVSRQWEMPVPLTETPEEPA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH SFSRPLDNPVVNVDQKLGMIRLPRVQLDGATVQEAVDYLRSQARTHDATAMTAAERGVNI HHCCCCCCCCCCHHHHCCEEECCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEE SVDPGPADSVSARDAAAKRITLNLQNVPLREALEYVARASGLILRTNAFGAELVSSSDGT EECCCCCCCCCHHHHCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCHHHHCCCCCC SYMVTKSITLPPGFFSGLSEDSGAENSDPFSSGDSGSSGMTLKRVDPQKALASMGVKFPE EEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCC GSFIKYNSGNSTLLFHGTPRDLSMLEELVAARTAEQPLQVVVSATFLEVNQTDLEELGFN CCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHCCCE WIVNLNLDPTKWFMGGAGTDKNDYNNSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSI EEEEECCCCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCEEECHHHH DSMIERGTSARSSDATYVPGGAPSIVTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIV HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCEEE RPGEKATFFSGRELIYPTEYDPPEVPNSTGNNNDWGDNDNNGGGIPVMPMTPAHPSAFET ECCCCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH RQLGTIFNVEVTGISDDKSIVEMTVVPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMV HHCCEEEEEEEECCCCCCCEEEEEECCHHHCCCCHHHCCCEEEEEECCCCCCCCCCEEEE KTSDNFILQPVFSTRRLTAPVRIATGNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFR EECCCEEEEECCCCCEECCCEEEECCCEEEEEEECCCCCEEECCCCCCEECCHHHHHHHH SKGSKEQRKAIIIMVKAEVVDPGGKKLYTPDTSIPDDEVPAGDASLPALSNAQ CCCCCCCCCEEEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA