Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736085
Identifier: 187736085
GI number: 187736085
Start: 1919317
End: 1920537
Strand: Reverse
Name: 187736085
Synonym: Amuc_1596
Alternate gene names: NA
Gene position: 1920537-1919317 (Counterclockwise)
Preceding gene: 187736087
Following gene: 187736084
Centisome position: 72.09
GC content: 58.89
Gene sequence:
>1221_bases ATGAGAGCCTTGGTCTATGATTGCAGCGCGGGCATCAGCGGAGATATGAATCTGGCCGCCCTGATTGATTTGGGAGCGGA CCGGGAAAACCTGGAACGGGAACTGTCCAAATTGCATGTGCACGGGGAGTGGAAGCTGGAATGCCGCCCGGCGCAGCAGC ACGGCATCCGGGGAACACGGATTGACGTGCTGACGGAGGAAGAAGGGCATTCCGGCAGCAGCCATGCGCACCATCACCGA ACTATGGCGGATATACGAAAGCTTATTGAGACAAGCGCCCTTTCCAATACCGTAAAACGGACGGCCCTTTCTATTTTCAC CCTGCTGGCGGAGGCGGAAGCCCGCGTACACGGCACTACTTCTGAAGAAGTACATTTCCATGAAGTGGGCGCGGTGGATT CCATCATCGATATCGCGGGAGCTGCCATCTGCCTGGAAATGCTCCGGGTGGACACCGTCTTCACCGGACCGGTGGAGCTG GGGTCTGGCACCGTAACCTGCCAGCACGGAACAATGCCCGTTCCTGCGCCGGCAACGGCTTTGCTGGCGAAACATTTCCG GGCCACCTTGAATGGAACCACCCATGAGGCCACTACACCCACCGGAGCCGCCTACATTGCCGCCCTGGCGCAGCCCGTCC CCTCTCCGCTGGCAGGCCGTATTACCGCAACCGGCTATGGGATCGGCCACCGCCAGGGACTTCCCGTACCGAATATTCTA CGGGTGATGCTGGTAGAAACGGAAGAAGAGGAAACTTCCCCGGAACTGCTGACGGAGCTGTGCGCCAATATAGACGATAT GACGCCGGAACAGACAGCCTACCTGGCGGAAAAGCTGATGGAGGCAGGTGCTCTGGATACCTGGCAGGAGTCCGTCTGCA TGAAGAAAGGCCGTCTGGCAGTCAAGGTTTGCGCCCTGTGCCAGCCGGAACAGACGGACCGCGTGCGGGAAGCCTTCTTC CGGCACAGCAGCACGCCGGGCATCAGGCAGCATGGCATGCTCCGCCATATTCTGCGCCGGGAAAGCGCCCCTGTCCACAC TCCCCATGGAACGGTTCATGTAAAAACTTCTTTCATGCACGGCCGCCCCCATTACCGGAAAGCGGAATTTGAAGATTGCA GAATCCTGGCGGAAAAAACCGGATTGCCGCTGGGACAATGCCAGCTGATGGGGCTTTTTCCCACATCTTCCCATGACAAC GACGCCACAGACTCCGTTTGA
Upstream 100 bases:
>100_bases GCAATCCGCCAAACCCGGTCCGCCAGGCACCGGGCCCTCTCCCGGGATAAGGCTCATTTTGACCTTGAGCCAGGAGTTTT TCCTTCTACACTGGGCCATC
Downstream 100 bases:
>100_bases ACGGCTTCGCGCCGTCCTTCTCCCCAGGAAACGCATTGCCGTCGCCTTGTCCGGGGGGCTGGACAGCAGCGTGTTGCTTG CCGCCGCCGTCCGTATCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MRALVYDCSAGISGDMNLAALIDLGADRENLERELSKLHVHGEWKLECRPAQQHGIRGTRIDVLTEEEGHSGSSHAHHHR TMADIRKLIETSALSNTVKRTALSIFTLLAEAEARVHGTTSEEVHFHEVGAVDSIIDIAGAAICLEMLRVDTVFTGPVEL GSGTVTCQHGTMPVPAPATALLAKHFRATLNGTTHEATTPTGAAYIAALAQPVPSPLAGRITATGYGIGHRQGLPVPNIL RVMLVETEEEETSPELLTELCANIDDMTPEQTAYLAEKLMEAGALDTWQESVCMKKGRLAVKVCALCQPEQTDRVREAFF RHSSTPGIRQHGMLRHILRRESAPVHTPHGTVHVKTSFMHGRPHYRKAEFEDCRILAEKTGLPLGQCQLMGLFPTSSHDN DATDSV
Sequences:
>Translated_406_residues MRALVYDCSAGISGDMNLAALIDLGADRENLERELSKLHVHGEWKLECRPAQQHGIRGTRIDVLTEEEGHSGSSHAHHHR TMADIRKLIETSALSNTVKRTALSIFTLLAEAEARVHGTTSEEVHFHEVGAVDSIIDIAGAAICLEMLRVDTVFTGPVEL GSGTVTCQHGTMPVPAPATALLAKHFRATLNGTTHEATTPTGAAYIAALAQPVPSPLAGRITATGYGIGHRQGLPVPNIL RVMLVETEEEETSPELLTELCANIDDMTPEQTAYLAEKLMEAGALDTWQESVCMKKGRLAVKVCALCQPEQTDRVREAFF RHSSTPGIRQHGMLRHILRRESAPVHTPHGTVHVKTSFMHGRPHYRKAEFEDCRILAEKTGLPLGQCQLMGLFPTSSHDN DATDSV >Mature_406_residues MRALVYDCSAGISGDMNLAALIDLGADRENLERELSKLHVHGEWKLECRPAQQHGIRGTRIDVLTEEEGHSGSSHAHHHR TMADIRKLIETSALSNTVKRTALSIFTLLAEAEARVHGTTSEEVHFHEVGAVDSIIDIAGAAICLEMLRVDTVFTGPVEL GSGTVTCQHGTMPVPAPATALLAKHFRATLNGTTHEATTPTGAAYIAALAQPVPSPLAGRITATGYGIGHRQGLPVPNIL RVMLVETEEEETSPELLTELCANIDDMTPEQTAYLAEKLMEAGALDTWQESVCMKKGRLAVKVCALCQPEQTDRVREAFF RHSSTPGIRQHGMLRHILRRESAPVHTPHGTVHVKTSFMHGRPHYRKAEFEDCRILAEKTGLPLGQCQLMGLFPTSSHDN DATDSV
Specific function: Unknown
COG id: COG1641
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0272 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1596_AKKM8 (B2ULM9)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001878197.1 - GeneID: 6275611 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1596 - HOGENOM: HBG733311 - OMA: IVGTCLG - ProtClustDB: CLSK2801824 - HAMAP: MF_01074 - InterPro: IPR002822 - TIGRFAMs: TIGR00299
Pfam domain/function: PF01969 DUF111
EC number: NA
Molecular weight: Translated: 44218; Mature: 44218
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALVYDCSAGISGDMNLAALIDLGADRENLERELSKLHVHGEWKLECRPAQQHGIRGTR CCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEECCEEEEEEECHHHCCCCCCE IDVLTEEEGHSGSSHAHHHRTMADIRKLIETSALSNTVKRTALSIFTLLAEAEARVHGTT EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SEEVHFHEVGAVDSIIDIAGAAICLEMLRVDTVFTGPVELGSGTVTCQHGTMPVPAPATA CCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCEECCCCEEEEECCCCCCCCCHHH LLAKHFRATLNGTTHEATTPTGAAYIAALAQPVPSPLAGRITATGYGIGHRQGLPVPNIL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHH RVMLVETEEEETSPELLTELCANIDDMTPEQTAYLAEKLMEAGALDTWQESVCMKKGRLA HHHEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHH VKVCALCQPEQTDRVREAFFRHSSTPGIRQHGMLRHILRRESAPVHTPHGTVHVKTSFMH EEHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEC GRPHYRKAEFEDCRILAEKTGLPLGQCQLMGLFPTSSHDNDATDSV CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MRALVYDCSAGISGDMNLAALIDLGADRENLERELSKLHVHGEWKLECRPAQQHGIRGTR CCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEECCEEEEEEECHHHCCCCCCE IDVLTEEEGHSGSSHAHHHRTMADIRKLIETSALSNTVKRTALSIFTLLAEAEARVHGTT EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SEEVHFHEVGAVDSIIDIAGAAICLEMLRVDTVFTGPVELGSGTVTCQHGTMPVPAPATA CCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCEECCCCEEEEECCCCCCCCCHHH LLAKHFRATLNGTTHEATTPTGAAYIAALAQPVPSPLAGRITATGYGIGHRQGLPVPNIL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHH RVMLVETEEEETSPELLTELCANIDDMTPEQTAYLAEKLMEAGALDTWQESVCMKKGRLA HHHEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHH VKVCALCQPEQTDRVREAFFRHSSTPGIRQHGMLRHILRRESAPVHTPHGTVHVKTSFMH EEHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEC GRPHYRKAEFEDCRILAEKTGLPLGQCQLMGLFPTSSHDNDATDSV CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA