Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736038
Identifier: 187736038
GI number: 187736038
Start: 1860743
End: 1862104
Strand: Reverse
Name: 187736038
Synonym: Amuc_1548
Alternate gene names: NA
Gene position: 1862104-1860743 (Counterclockwise)
Preceding gene: 187736044
Following gene: 187736033
Centisome position: 69.9
GC content: 55.65
Gene sequence:
>1362_bases ATGATACACATGACTTTAAGAAAGAAAACTCTCTGGTTTCTTGGAGCTTTGAGCTTTTTTGCCTCTCTTGCCGCGGCTTT CGCTGTTTTCTGGCTGAACAGGAATGATTCTTCTCCCGCGGAATGGAATTTCAACCCTATCTGGACAAAAGCGGAAAAAG AACAAATTCTGACCGCAGCGAATTTCACAGCCCATCGAAGCCCGGAACGTTTCATTTACCGCGGGCTTTCCCTCAATTCA CGCCATATTGACTGGCACATGTTTTCCGAGGTTTCCATGCGCCAATATATGAAGGACGAAATCAGGGAACGGCTTCAGAT GATACGGGACACGGCGGAAAGCGCAGACGGACGCTGCATCACTCCATCCCATGAAACCCTGCTGCATCTCGCCGCCGGGC TCGGAGAAGTGCAGTTGCTGAACCGCCTTTTACAGCGCCATGCGGACCCGAACGTTCAGATCATCCTGCCGCAACAGGCC TTTCCCTCCATTCCGGACTCCGAACAGGGAAATACCCCCCTGACTTACGCCTGCCAGCCAGGCATGGACGACTCCACGCC CCTGCCGGTGCATAACAGGCTCTCCTGCCTTAATCTCCTGATTCAGTACGGTGCGGATGTGAATAAACCGGGGCCGCTGG GCTGGCCGCCCCTCGTCATCACCTGTGTGGCCGGTATTGGAGGAGCACCCTATGAGGAAGCGGCCCTGTTTCTTCTGAAA TGCGGTGCGGATATTTCCCTCCAGCCTGAATTGAAAGGTAAAAAAACAAGTCTGCTCACATGGGCCACGGCCGCCGGATA CCCCCTGCTGGTCCGCAAGCTTTGCGAAGCCGGGTACGATCCCAATTTCCGCGGGGAAATGGCCCCGCCCCTTCTTTCCC TGAACCTGAACACTCCGAACGCCGCACTGCAAATTGCACATATTCTGCTGGAATACGGAGCGGACGTGAATGCGGCCATG CCCGCGTCCACCACCCTGCCGGAAACCGCGGGAGACACGGCCCTGCTGAACCTGTGCCGCCAGCTGGCTTTCATTGATGT GTCCTGCCTCCCTCAAATCAGGGATCTGGTCAATCTCTTCATCAAAGAGGGAGCTGACGTCAACCATCAAAACGCCGCCG GAGAAACTCCCCTCATGGCATGCTGCCGAGGCATGCTGCTGGGAGACGATTCCCTGGACCGGCTGAAACTGGGTATTGCG CGTCTTCTGCTGGACCACCACGCAAACCCATCCCTGAAAGACAAATACGGACGCACAGCCCTCCAGAGGATAGGCAACCG GTCAAACGAACATCTCCAGATGGTGCTGAAATACCTGCCGGAATTAAGCGCTCCGCCGCTTCCGAAGAAGGAAAACCATT GA
Upstream 100 bases:
>100_bases TTCCCACATGGTTTGCCCCGGGCATTCTTTGCTCATACTATTTTTTCATTGCCCGGAGTTATGGATTCCTGCATCATGGC CTTTCGCAGTACCCCTGCTT
Downstream 100 bases:
>100_bases ATCCCGCCGCTCCTTACTTCACCCGGGCATTCACCGTATCCAGCAGAATGCCGGCATCCGGTTGGGACCCGGTGCTGATG AAATGGATATAACTGGCTCC
Product: Ankyrin
Products: NA
Alternate protein names: Ankyrin Repeat-Containing Protein
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MIHMTLRKKTLWFLGALSFFASLAAAFAVFWLNRNDSSPAEWNFNPIWTKAEKEQILTAANFTAHRSPERFIYRGLSLNS RHIDWHMFSEVSMRQYMKDEIRERLQMIRDTAESADGRCITPSHETLLHLAAGLGEVQLLNRLLQRHADPNVQIILPQQA FPSIPDSEQGNTPLTYACQPGMDDSTPLPVHNRLSCLNLLIQYGADVNKPGPLGWPPLVITCVAGIGGAPYEEAALFLLK CGADISLQPELKGKKTSLLTWATAAGYPLLVRKLCEAGYDPNFRGEMAPPLLSLNLNTPNAALQIAHILLEYGADVNAAM PASTTLPETAGDTALLNLCRQLAFIDVSCLPQIRDLVNLFIKEGADVNHQNAAGETPLMACCRGMLLGDDSLDRLKLGIA RLLLDHHANPSLKDKYGRTALQRIGNRSNEHLQMVLKYLPELSAPPLPKKENH
Sequences:
>Translated_453_residues MIHMTLRKKTLWFLGALSFFASLAAAFAVFWLNRNDSSPAEWNFNPIWTKAEKEQILTAANFTAHRSPERFIYRGLSLNS RHIDWHMFSEVSMRQYMKDEIRERLQMIRDTAESADGRCITPSHETLLHLAAGLGEVQLLNRLLQRHADPNVQIILPQQA FPSIPDSEQGNTPLTYACQPGMDDSTPLPVHNRLSCLNLLIQYGADVNKPGPLGWPPLVITCVAGIGGAPYEEAALFLLK CGADISLQPELKGKKTSLLTWATAAGYPLLVRKLCEAGYDPNFRGEMAPPLLSLNLNTPNAALQIAHILLEYGADVNAAM PASTTLPETAGDTALLNLCRQLAFIDVSCLPQIRDLVNLFIKEGADVNHQNAAGETPLMACCRGMLLGDDSLDRLKLGIA RLLLDHHANPSLKDKYGRTALQRIGNRSNEHLQMVLKYLPELSAPPLPKKENH >Mature_453_residues MIHMTLRKKTLWFLGALSFFASLAAAFAVFWLNRNDSSPAEWNFNPIWTKAEKEQILTAANFTAHRSPERFIYRGLSLNS RHIDWHMFSEVSMRQYMKDEIRERLQMIRDTAESADGRCITPSHETLLHLAAGLGEVQLLNRLLQRHADPNVQIILPQQA FPSIPDSEQGNTPLTYACQPGMDDSTPLPVHNRLSCLNLLIQYGADVNKPGPLGWPPLVITCVAGIGGAPYEEAALFLLK CGADISLQPELKGKKTSLLTWATAAGYPLLVRKLCEAGYDPNFRGEMAPPLLSLNLNTPNAALQIAHILLEYGADVNAAM PASTTLPETAGDTALLNLCRQLAFIDVSCLPQIRDLVNLFIKEGADVNHQNAAGETPLMACCRGMLLGDDSLDRLKLGIA RLLLDHHANPSLKDKYGRTALQRIGNRSNEHLQMVLKYLPELSAPPLPKKENH
Specific function: Unknown
COG id: COG0666
COG function: function code R; FOG: Ankyrin repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32967601, Length=376, Percent_Identity=26.8617021276596, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI38683807, Length=308, Percent_Identity=29.2207792207792, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI38683816, Length=308, Percent_Identity=29.2207792207792, Blast_Score=66, Evalue=7e-11, Organism=Drosophila melanogaster, GI28571867, Length=259, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=6e-11, Organism=Drosophila melanogaster, GI28571865, Length=259, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50131; Mature: 50131
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHMTLRKKTLWFLGALSFFASLAAAFAVFWLNRNDSSPAEWNFNPIWTKAEKEQILTAA CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH NFTAHRSPERFIYRGLSLNSRHIDWHMFSEVSMRQYMKDEIRERLQMIRDTAESADGRCI CCHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE TPSHETLLHLAAGLGEVQLLNRLLQRHADPNVQIILPQQAFPSIPDSEQGNTPLTYACQP CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCEEEEECC GMDDSTPLPVHNRLSCLNLLIQYGADVNKPGPLGWPPLVITCVAGIGGAPYEEAALFLLK CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHC CGADISLQPELKGKKTSLLTWATAAGYPLLVRKLCEAGYDPNFRGEMAPPLLSLNLNTPN CCCCCEECCCCCCCCCCEEEEHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCH AALQIAHILLEYGADVNAAMPASTTLPETAGDTALLNLCRQLAFIDVSCLPQIRDLVNLF HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH IKEGADVNHQNAAGETPLMACCRGMLLGDDSLDRLKLGIARLLLDHHANPSLKDKYGRTA HHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LQRIGNRSNEHLQMVLKYLPELSAPPLPKKENH HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MIHMTLRKKTLWFLGALSFFASLAAAFAVFWLNRNDSSPAEWNFNPIWTKAEKEQILTAA CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH NFTAHRSPERFIYRGLSLNSRHIDWHMFSEVSMRQYMKDEIRERLQMIRDTAESADGRCI CCHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE TPSHETLLHLAAGLGEVQLLNRLLQRHADPNVQIILPQQAFPSIPDSEQGNTPLTYACQP CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCEEEEECC GMDDSTPLPVHNRLSCLNLLIQYGADVNKPGPLGWPPLVITCVAGIGGAPYEEAALFLLK CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHC CGADISLQPELKGKKTSLLTWATAAGYPLLVRKLCEAGYDPNFRGEMAPPLLSLNLNTPN CCCCCEECCCCCCCCCCEEEEHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCH AALQIAHILLEYGADVNAAMPASTTLPETAGDTALLNLCRQLAFIDVSCLPQIRDLVNLF HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH IKEGADVNHQNAAGETPLMACCRGMLLGDDSLDRLKLGIARLLLDHHANPSLKDKYGRTA HHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LQRIGNRSNEHLQMVLKYLPELSAPPLPKKENH HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA