Click here to switch to the map view.

The map label for this gene is yggB [C]

Identifier: 187735813

GI number: 187735813

Start: 1597950

End: 1598852

Strand: Reverse

Name: yggB [C]

Synonym: Amuc_1320

Alternate gene names: 187735813

Gene position: 1598852-1597950 (Counterclockwise)

Preceding gene: 187735814

Following gene: 187735812

Centisome position: 60.01

GC content: 54.82

Gene sequence:

>903_bases
ATGAATCTCATGGCAGACGCATCCTCCAGGGAAGATATCTGGACAAAAACCATGGACTTCCTGAACATGCCGGACTGGCT
CAAGCTGGAAATGGTGCAGTCCGTGGGAATCAAAATCCTGCATGTGGCGGTATGGCTGGTGATCAGCTGGATACTCCTGA
AACTGTTCTGCCAGGTGCTCCGGAAAATCACTGCGTTGAAAATGTCGCCCCAGGCCTCCCGCCTGACGGTAAAAATCGTC
AAAAACGTCGGCTACATTATTATAGGCGTGGAGGCCTTCGCCCTGATGGGGTTCGATATCCTGACCCTGCTGGGCGCGGC
CAGCATCATCGGCGTCGCCGTAGGCTTCGCCTCCCAGACCTCCCTGTCCAACATCATCAGCGGCCTCTTCCTGGTAGGGG
AAAAGCAGATCAACCTGGGGGATATGATTGAAGTGAATGGAATCACCGGGAACGTGGACTCCATCAACCTGATGTCCGTC
CAGCTCCGGCTGCCGAACAACACCATGGTGCGCATCCCCAATGAAATAATCATCAAGAATCCGGTCAGCAATATCACCCG
TTTTTCCACGCGCCGGTGCGACCTGAGCCTGGGCGTGGACTATAACTGCGACATTGAGCATGTCGTGAACGTCCTCCGGG
AAGTAGTCAAACAAAACAAATTCTGCCTGGATGACCCCGCGCCCCTCATCTCGTTTTCAGGGTTCCAGGACTCTTCCCTG
GGCTTTACCGTAGGGGCCTGGTGCCGGAAAGACAATTTCCTGGACTGCCAGAAAACGCTCGCCCATGACATCAAGCGCCG
CTTTGAGGAAGAAGGCATTTCCTTCCCCTTCCCCACCCGCAGCCTGGAGAGCAGAAGCCCCATCAAGGTGGAAATCTCCG
GACCTCCGGAGAAAAATCAATAA

Upstream 100 bases:

>100_bases
GAACACCCTGCCCTTTCCGCTGCCGGAGGAACTGTCATAAACCGGGGGGAATACGCGCGCGCCCCTTGAGCCGGGGAGAA
GCGTCTGCTACATCCTTCAT

Downstream 100 bases:

>100_bases
GGAATCTCTTTTTGCTTTCTTTTTGCCCCGTGAAATTTCAATCTTGTCTGCGTAAAATCCGCATCTATGTCTGACACATC
CGCACCAGCCTATCGAAGAA

Product: MscS Mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNLMADASSREDIWTKTMDFLNMPDWLKLEMVQSVGIKILHVAVWLVISWILLKLFCQVLRKITALKMSPQASRLTVKIV
KNVGYIIIGVEAFALMGFDILTLLGAASIIGVAVGFASQTSLSNIISGLFLVGEKQINLGDMIEVNGITGNVDSINLMSV
QLRLPNNTMVRIPNEIIIKNPVSNITRFSTRRCDLSLGVDYNCDIEHVVNVLREVVKQNKFCLDDPAPLISFSGFQDSSL
GFTVGAWCRKDNFLDCQKTLAHDIKRRFEEEGISFPFPTRSLESRSPIKVEISGPPEKNQ

Sequences:

>Translated_300_residues
MNLMADASSREDIWTKTMDFLNMPDWLKLEMVQSVGIKILHVAVWLVISWILLKLFCQVLRKITALKMSPQASRLTVKIV
KNVGYIIIGVEAFALMGFDILTLLGAASIIGVAVGFASQTSLSNIISGLFLVGEKQINLGDMIEVNGITGNVDSINLMSV
QLRLPNNTMVRIPNEIIIKNPVSNITRFSTRRCDLSLGVDYNCDIEHVVNVLREVVKQNKFCLDDPAPLISFSGFQDSSL
GFTVGAWCRKDNFLDCQKTLAHDIKRRFEEEGISFPFPTRSLESRSPIKVEISGPPEKNQ
>Mature_300_residues
MNLMADASSREDIWTKTMDFLNMPDWLKLEMVQSVGIKILHVAVWLVISWILLKLFCQVLRKITALKMSPQASRLTVKIV
KNVGYIIIGVEAFALMGFDILTLLGAASIIGVAVGFASQTSLSNIISGLFLVGEKQINLGDMIEVNGITGNVDSINLMSV
QLRLPNNTMVRIPNEIIIKNPVSNITRFSTRRCDLSLGVDYNCDIEHVVNVLREVVKQNKFCLDDPAPLISFSGFQDSSL
GFTVGAWCRKDNFLDCQKTLAHDIKRRFEEEGISFPFPTRSLESRSPIKVEISGPPEKNQ

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=179, Percent_Identity=31.8435754189944, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786670, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367355, Length=247, Percent_Identity=23.4817813765182, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787591, Length=247, Percent_Identity=25.1012145748988, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 33448; Mature: 33448

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLMADASSREDIWTKTMDFLNMPDWLKLEMVQSVGIKILHVAVWLVISWILLKLFCQVL
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
RKITALKMSPQASRLTVKIVKNVGYIIIGVEAFALMGFDILTLLGAASIIGVAVGFASQT
HHHHHHCCCCCHHHHHHEEHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SLSNIISGLFLVGEKQINLGDMIEVNGITGNVDSINLMSVQLRLPNNTMVRIPNEIIIKN
HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEECCCEEEEEC
PVSNITRFSTRRCDLSLGVDYNCDIEHVVNVLREVVKQNKFCLDDPAPLISFSGFQDSSL
CHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCC
GFTVGAWCRKDNFLDCQKTLAHDIKRRFEEEGISFPFPTRSLESRSPIKVEISGPPEKNQ
CEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MNLMADASSREDIWTKTMDFLNMPDWLKLEMVQSVGIKILHVAVWLVISWILLKLFCQVL
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
RKITALKMSPQASRLTVKIVKNVGYIIIGVEAFALMGFDILTLLGAASIIGVAVGFASQT
HHHHHHCCCCCHHHHHHEEHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SLSNIISGLFLVGEKQINLGDMIEVNGITGNVDSINLMSVQLRLPNNTMVRIPNEIIIKN
HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEEECCCEEEEEC
PVSNITRFSTRRCDLSLGVDYNCDIEHVVNVLREVVKQNKFCLDDPAPLISFSGFQDSSL
CHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCC
GFTVGAWCRKDNFLDCQKTLAHDIKRRFEEEGISFPFPTRSLESRSPIKVEISGPPEKNQ
CEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]