Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735770
Identifier: 187735770
GI number: 187735770
Start: 1537129
End: 1538814
Strand: Reverse
Name: 187735770
Synonym: Amuc_1276
Alternate gene names: NA
Gene position: 1538814-1537129 (Counterclockwise)
Preceding gene: 187735771
Following gene: 187735769
Centisome position: 57.76
GC content: 53.02
Gene sequence:
>1686_bases ATGAATAATATCTTCCGTATTCTCCTTTTAGGAGCGCTCCCCCTGGCAGCCTTTCCCGTTATCCAGGCGTCAGCGCAGGA ACCGGATATCCAGACACTACTTTCAGCCGAACGTTCCTCGTTCATCTCCGGAAAAGCCCGGGATATTCTGTGCAGGAAAC TGGGAACCGCAAACCTCGACACGGATAAAATCCGGGCCATGGCACACGCCCCGCAAGTCGCCCTGTTATGCCACCTGTAC CAATTTTTCAGCACCGCGGAAAACGGAGAACCGTTCACGCAGCATGAACTCAAGGACGGGGCATTCAGGAAATGGCTCTC CACCCACCCGGAAGTCTTCAGAATGCTTGCCCTATCCGGGGCAGCCGGCAAACAAACCCTATCCATATTTTACCGCATCT GGAACGCGAACAATAAAACGCTCCGCCCCGTTGAAACCAGCATGGCTCTGGGGGCAGGGCTTGCCTCAAATGTCATCCCT CCTGAAGAATGCCTGTCCAAATTCAATTTTTACCGGGAATCCTACTTCCAATCCGCATGTCATCCCCAGGCGGACACGAT GCAGCCGTGGGAATGGGCCATCGTTTTCCGTGGCAGAGAGAGCCTGGAAGACCTGTCCTGGGCCCAGCAGTTCATAGAGA AAAAACAGATCCCTCCCGAACAGGCTGGAAATAAATTCATGGGTTTCATCCCCTATCGCAGGAAAAACCTTCAGGGAGTC AGCGTTCATGCCGGAGCCGCTTTTTACGACCACAAACCGGTCACATTAAAGCTTTATACGGAATACGGAGGCGTGTGCGG CGCCGTCTCCAAAGGAGCGGCAGGCTTTCTGAGAGCCAAAGGCGTCCCCGCGTGGGCCATCGGGCAGCCGGGACACTGCG CCTTTATCTGGAAACACCCCGGCGGACACTGGAAAATCGGCAACAATATCAGCGGATGGAACTGGTCAACGGGAAAAAGC CAGATACCCTGGAACGGCCCCGTCCAGCTCATCCCGGCTTACAATGCCTTCATTCATCACGGTCTGGCGGAAGAATCCTT CCTGATGACGGTTTTATCTGACTGCTCTCCGCGTCCCGTCCAACGGGAATTGTTGCTGAAAGAAGCCTGCAAGATGAACC CATTTAATTATCCGGCATGGCGTCGTTACCTGAGCATGAAGGCCAAAGGAATCAATGACCGGCAAAAACTCACCCTGCTT AAAGAACTGGCGCAGGCCATGCCCCATGAACACAACCTCCTCCATCATGCAGCGGTAAACATACTCAAAATCCGGGAAAG CAAAGTCAATCCCTATGAACTGTACGCCTGTTTCCTGGACTCCGACTGCTCTCCCGCGGCAGAGGAACTCTTCACGAGGC TGTGCTGGAACAAACTCGTGGCGGATTGCCCTGAAATCGGCAAGATAATCAAATACAGGGAGGGATTCATCGGGAAGCAT CTTTCCGTCTGGGCCAGGAAAGGGAACAATGCCTCATGGACGCCTAAAATGAAAAGATACTCCGCCGGCATGATGGAAGG CGCCATCACGGCATTGGAAAAAAGAGAACAGACCCGCACATACTATGTGGCAACCTACCGCCGTCTGCTGGAAATATGGA ATGACAAAAAATTAAAGCATCAAGGGGAAATATTGATCAACAAAATCAGCGGCAATAAAGTCTCGCCCCTGCGGCAGAAC CGGTAA
Upstream 100 bases:
>100_bases TCATTTTCCCAGAAAACAAAAATATTTCCGTTGACAGTTCATCATCTTTTTGCCATATGATGGATTATATTAGGTATGGA TACAATTCCGCCCACCTCCC
Downstream 100 bases:
>100_bases CCAGCACAGAGAATTTTAACATGAACGCGAACGCCATCATCCGGGCATCCGCCCCATTCTTCCAAAAATACGTCTTATCC CCGGGAATGCCGGCAAAATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MNNIFRILLLGALPLAAFPVIQASAQEPDIQTLLSAERSSFISGKARDILCRKLGTANLDTDKIRAMAHAPQVALLCHLY QFFSTAENGEPFTQHELKDGAFRKWLSTHPEVFRMLALSGAAGKQTLSIFYRIWNANNKTLRPVETSMALGAGLASNVIP PEECLSKFNFYRESYFQSACHPQADTMQPWEWAIVFRGRESLEDLSWAQQFIEKKQIPPEQAGNKFMGFIPYRRKNLQGV SVHAGAAFYDHKPVTLKLYTEYGGVCGAVSKGAAGFLRAKGVPAWAIGQPGHCAFIWKHPGGHWKIGNNISGWNWSTGKS QIPWNGPVQLIPAYNAFIHHGLAEESFLMTVLSDCSPRPVQRELLLKEACKMNPFNYPAWRRYLSMKAKGINDRQKLTLL KELAQAMPHEHNLLHHAAVNILKIRESKVNPYELYACFLDSDCSPAAEELFTRLCWNKLVADCPEIGKIIKYREGFIGKH LSVWARKGNNASWTPKMKRYSAGMMEGAITALEKREQTRTYYVATYRRLLEIWNDKKLKHQGEILINKISGNKVSPLRQN R
Sequences:
>Translated_561_residues MNNIFRILLLGALPLAAFPVIQASAQEPDIQTLLSAERSSFISGKARDILCRKLGTANLDTDKIRAMAHAPQVALLCHLY QFFSTAENGEPFTQHELKDGAFRKWLSTHPEVFRMLALSGAAGKQTLSIFYRIWNANNKTLRPVETSMALGAGLASNVIP PEECLSKFNFYRESYFQSACHPQADTMQPWEWAIVFRGRESLEDLSWAQQFIEKKQIPPEQAGNKFMGFIPYRRKNLQGV SVHAGAAFYDHKPVTLKLYTEYGGVCGAVSKGAAGFLRAKGVPAWAIGQPGHCAFIWKHPGGHWKIGNNISGWNWSTGKS QIPWNGPVQLIPAYNAFIHHGLAEESFLMTVLSDCSPRPVQRELLLKEACKMNPFNYPAWRRYLSMKAKGINDRQKLTLL KELAQAMPHEHNLLHHAAVNILKIRESKVNPYELYACFLDSDCSPAAEELFTRLCWNKLVADCPEIGKIIKYREGFIGKH LSVWARKGNNASWTPKMKRYSAGMMEGAITALEKREQTRTYYVATYRRLLEIWNDKKLKHQGEILINKISGNKVSPLRQN R >Mature_561_residues MNNIFRILLLGALPLAAFPVIQASAQEPDIQTLLSAERSSFISGKARDILCRKLGTANLDTDKIRAMAHAPQVALLCHLY QFFSTAENGEPFTQHELKDGAFRKWLSTHPEVFRMLALSGAAGKQTLSIFYRIWNANNKTLRPVETSMALGAGLASNVIP PEECLSKFNFYRESYFQSACHPQADTMQPWEWAIVFRGRESLEDLSWAQQFIEKKQIPPEQAGNKFMGFIPYRRKNLQGV SVHAGAAFYDHKPVTLKLYTEYGGVCGAVSKGAAGFLRAKGVPAWAIGQPGHCAFIWKHPGGHWKIGNNISGWNWSTGKS QIPWNGPVQLIPAYNAFIHHGLAEESFLMTVLSDCSPRPVQRELLLKEACKMNPFNYPAWRRYLSMKAKGINDRQKLTLL KELAQAMPHEHNLLHHAAVNILKIRESKVNPYELYACFLDSDCSPAAEELFTRLCWNKLVADCPEIGKIIKYREGFIGKH LSVWARKGNNASWTPKMKRYSAGMMEGAITALEKREQTRTYYVATYRRLLEIWNDKKLKHQGEILINKISGNKVSPLRQN R
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63447; Mature: 63447
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: PS00191 CYTOCHROME_B5_1 ; PS00226 IF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNIFRILLLGALPLAAFPVIQASAQEPDIQTLLSAERSSFISGKARDILCRKLGTANLD CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC TDKIRAMAHAPQVALLCHLYQFFSTAENGEPFTQHELKDGAFRKWLSTHPEVFRMLALSG HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC AAGKQTLSIFYRIWNANNKTLRPVETSMALGAGLASNVIPPEECLSKFNFYRESYFQSAC CCCHHHHHHHHHEECCCCCEECCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHC HPQADTMQPWEWAIVFRGRESLEDLSWAQQFIEKKQIPPEQAGNKFMGFIPYRRKNLQGV CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCHHHCCCCCE SVHAGAAFYDHKPVTLKLYTEYGGVCGAVSKGAAGFLRAKGVPAWAIGQPGHCAFIWKHP EEECCCEEECCCCEEEEEEECCCCHHHHHHCCCCHHHHCCCCCEEECCCCCCEEEEEECC GGHWKIGNNISGWNWSTGKSQIPWNGPVQLIPAYNAFIHHGLAEESFLMTVLSDCSPRPV CCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCH QRELLLKEACKMNPFNYPAWRRYLSMKAKGINDRQKLTLLKELAQAMPHEHNLLHHAAVN HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH ILKIRESKVNPYELYACFLDSDCSPAAEELFTRLCWNKLVADCPEIGKIIKYREGFIGKH HHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHCCH LSVWARKGNNASWTPKMKRYSAGMMEGAITALEKREQTRTYYVATYRRLLEIWNDKKLKH HHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QGEILINKISGNKVSPLRQNR CCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure MNNIFRILLLGALPLAAFPVIQASAQEPDIQTLLSAERSSFISGKARDILCRKLGTANLD CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC TDKIRAMAHAPQVALLCHLYQFFSTAENGEPFTQHELKDGAFRKWLSTHPEVFRMLALSG HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC AAGKQTLSIFYRIWNANNKTLRPVETSMALGAGLASNVIPPEECLSKFNFYRESYFQSAC CCCHHHHHHHHHEECCCCCEECCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHC HPQADTMQPWEWAIVFRGRESLEDLSWAQQFIEKKQIPPEQAGNKFMGFIPYRRKNLQGV CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCHHHCCCCCE SVHAGAAFYDHKPVTLKLYTEYGGVCGAVSKGAAGFLRAKGVPAWAIGQPGHCAFIWKHP EEECCCEEECCCCEEEEEEECCCCHHHHHHCCCCHHHHCCCCCEEECCCCCCEEEEEECC GGHWKIGNNISGWNWSTGKSQIPWNGPVQLIPAYNAFIHHGLAEESFLMTVLSDCSPRPV CCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCH QRELLLKEACKMNPFNYPAWRRYLSMKAKGINDRQKLTLLKELAQAMPHEHNLLHHAAVN HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH ILKIRESKVNPYELYACFLDSDCSPAAEELFTRLCWNKLVADCPEIGKIIKYREGFIGKH HHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHCCH LSVWARKGNNASWTPKMKRYSAGMMEGAITALEKREQTRTYYVATYRRLLEIWNDKKLKH HHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QGEILINKISGNKVSPLRQNR CCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA