Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735660
Identifier: 187735660
GI number: 187735660
Start: 1400450
End: 1401319
Strand: Reverse
Name: 187735660
Synonym: Amuc_1166
Alternate gene names: NA
Gene position: 1401319-1400450 (Counterclockwise)
Preceding gene: 187735661
Following gene: 187735659
Centisome position: 52.6
GC content: 61.49
Gene sequence:
>870_bases ATGACCTCTTTCCCCTTCCCCAGCCAGGTGATCCAGCCGGACGCCGAACAGGCGGCGCGCCGTCTCCGGCTGCCCTTTTC CTGCTGCGCCTGGAAAGGAACACAGGGCCATTGGGAGGGAACGGGAGCAGGCAACTCCATCGATTTCCAGGGAAGCCGTT CCTACCAGTGGGGGGATGACCCGCGGGATATCCATTGGGCGGCGTACGCCAGAACCGGCCAGCTCACCATGAAAATCTTC CGGGCGGAACTGTCACCGCAGGTAGACGTGGCGGTAGATGTTTCCGAATCCATGTTTTTTCACGAAGAGCGCGCGGCACG CACGCGGGGCCTGCTTCAATTTTGCCTGCTCTCCGCCATCGGAACGGGAGCCCAGGTGAAGATTCATGCGGTGAAAGGGC GCCGTATCATCCCCCTGGACCAGGAAGATGTTCTCTCCGGCCAATGGGAAGCGCAGATCCAGAGCCTTCCCCCGGATGAA TCCATGCCCTCCATTTCCATCTGGCGCCCCAATGGAATGAAAATCTTCATCTCCGACCTGCTCTACCCGGGGGAACCGGA CAACCTTCTGGAAACCATGGCCTCCTTAAAAGGGATGTCCGTCATCCTGGCACCCACGCTGCAGGAAGAAGCGGAACTCC CCGCCGGCAACGCCAGACTCAAAAACTGTGAATCCGGCCACCTGCGCCGCCAGCTCATCACCCCTTCCCTGTCCCGGAGG TACGCCCGCGCCTACGCCGCCCATTTTGAACTCTGGATTTCTGCCTGCCTGCGCCGCCAGGCCGTTCTTGCCCGCATCCC CTGCAAGGGGACGCTGACGGAAGCCCTGTCCGGAGAAGCATTACGGCAGGGTGCCGTGGAACTCTCCTGA
Upstream 100 bases:
>100_bases ATATTCCGGAACGCATCCCCCGAACCTCTCCAGAAACCGGGAAATTCCCGCCGGGAACGGGAATAGTTCTTGCCCGCCGT TTTGCCTCCCCCCCATCCCC
Downstream 100 bases:
>100_bases ACCGCACCCTTTACTCTCCCCCCAAGCCATGCTCCCCCACTTCACCAACACGACCGCGTTCTGGGCGCTTCTGGCCATCC CCCTCATCACCGCCATCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MTSFPFPSQVIQPDAEQAARRLRLPFSCCAWKGTQGHWEGTGAGNSIDFQGSRSYQWGDDPRDIHWAAYARTGQLTMKIF RAELSPQVDVAVDVSESMFFHEERAARTRGLLQFCLLSAIGTGAQVKIHAVKGRRIIPLDQEDVLSGQWEAQIQSLPPDE SMPSISIWRPNGMKIFISDLLYPGEPDNLLETMASLKGMSVILAPTLQEEAELPAGNARLKNCESGHLRRQLITPSLSRR YARAYAAHFELWISACLRRQAVLARIPCKGTLTEALSGEALRQGAVELS
Sequences:
>Translated_289_residues MTSFPFPSQVIQPDAEQAARRLRLPFSCCAWKGTQGHWEGTGAGNSIDFQGSRSYQWGDDPRDIHWAAYARTGQLTMKIF RAELSPQVDVAVDVSESMFFHEERAARTRGLLQFCLLSAIGTGAQVKIHAVKGRRIIPLDQEDVLSGQWEAQIQSLPPDE SMPSISIWRPNGMKIFISDLLYPGEPDNLLETMASLKGMSVILAPTLQEEAELPAGNARLKNCESGHLRRQLITPSLSRR YARAYAAHFELWISACLRRQAVLARIPCKGTLTEALSGEALRQGAVELS >Mature_288_residues TSFPFPSQVIQPDAEQAARRLRLPFSCCAWKGTQGHWEGTGAGNSIDFQGSRSYQWGDDPRDIHWAAYARTGQLTMKIFR AELSPQVDVAVDVSESMFFHEERAARTRGLLQFCLLSAIGTGAQVKIHAVKGRRIIPLDQEDVLSGQWEAQIQSLPPDES MPSISIWRPNGMKIFISDLLYPGEPDNLLETMASLKGMSVILAPTLQEEAELPAGNARLKNCESGHLRRQLITPSLSRRY ARAYAAHFELWISACLRRQAVLARIPCKGTLTEALSGEALRQGAVELS
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32063; Mature: 31932
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFPFPSQVIQPDAEQAARRLRLPFSCCAWKGTQGHWEGTGAGNSIDFQGSRSYQWGDD CCCCCCCHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRDIHWAAYARTGQLTMKIFRAELSPQVDVAVDVSESMFFHEERAARTRGLLQFCLLSAI CCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH GTGAQVKIHAVKGRRIIPLDQEDVLSGQWEAQIQSLPPDESMPSISIWRPNGMKIFISDL CCCCEEEEEEECCCEECCCCHHHHHCCCHHHHHCCCCCCCCCCEEEEECCCCCEEEEECC LYPGEPDNLLETMASLKGMSVILAPTLQEEAELPAGNARLKNCESGHLRRQLITPSLSRR CCCCCCHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHH YARAYAAHFELWISACLRRQAVLARIPCKGTLTEALSGEALRQGAVELS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCCCCC >Mature Secondary Structure TSFPFPSQVIQPDAEQAARRLRLPFSCCAWKGTQGHWEGTGAGNSIDFQGSRSYQWGDD CCCCCCHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRDIHWAAYARTGQLTMKIFRAELSPQVDVAVDVSESMFFHEERAARTRGLLQFCLLSAI CCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH GTGAQVKIHAVKGRRIIPLDQEDVLSGQWEAQIQSLPPDESMPSISIWRPNGMKIFISDL CCCCEEEEEEECCCEECCCCHHHHHCCCHHHHHCCCCCCCCCCEEEEECCCCCEEEEECC LYPGEPDNLLETMASLKGMSVILAPTLQEEAELPAGNARLKNCESGHLRRQLITPSLSRR CCCCCCHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHH YARAYAAHFELWISACLRRQAVLARIPCKGTLTEALSGEALRQGAVELS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA