Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735659
Identifier: 187735659
GI number: 187735659
Start: 1398694
End: 1400421
Strand: Reverse
Name: 187735659
Synonym: Amuc_1165
Alternate gene names: NA
Gene position: 1400421-1398694 (Counterclockwise)
Preceding gene: 187735660
Following gene: 187735658
Centisome position: 52.57
GC content: 61.05
Gene sequence:
>1728_bases ATGCTCCCCCACTTCACCAACACGACCGCGTTCTGGGCGCTTCTGGCCATCCCCCTCATCACCGCCATCCATTTCCTCCA GCACAAAACAAAAACACAGGCCACGGCCACGCTCTTCCTGTTGGAAGCTCTGGCTCCGGAGGCCCATGAGGGTAATGCCT GGGACAGGTTACGCATATCACGCTCCTTCTGGATGCAAATTCTGGCCGTCCTCCTGCTTACCTGGGTTCTGGCCGCTCCT GTCTGGCCCGGCAAAGGCTCCGGCCAGACCGTAGTCTTCATTCTGGATGATTCCGCAAATATGGCCCCCTTTCGTCAAGA AGCCGTGAATGCCGTCTCCGAAGACATGGACACCATCCTCCGGTGCGGAATCCCGGTCACATGGGTTCTCATGGGCAGCA GGGCTTCCGGACAGCCGCTCTACCGGGGGCCGTCCGTCCGCCAGGCCCTGCGCGCCCTGGATCTCTGGCAGCCGCGCGAA GGAACACATGACCTGGCCCCTGCCCTGCGCACCGCCACAGCCGTTGCCGGGCCAACGGGAATCACGCGCCTGATTACATC CACTGCCCGGAGGGTTCCCGCCGGCCAATCCGCACGGGGTGTAGGGAAACCTCTGGAAAATGCGGGTTTTGCGGGAATAA CCCCGGTGGAGGCCGCCGGCCCCGGCCATTGGAGGATTGCCGTTAAAAACAATAGCCCATCCCCTCTTCGGAGCGAAATC TCCATCCATACGGAAAGCGGGCGTCCTCCTGCCCGGCGTTCCCTGTTCCTGAATCCAGGAACTGTCACGGAATTTGAATA CAGCCTCCCTCCTGAAAGCGGAAAGGCCGTGCTCCGGCTCCCGACGGACGCCTTCCCGGCGGACAATGAGCTCCTGCTGG TCCGCTCCGCTCCCGCCCCCGTCGCCGTCAGCATGGAAATTCCAGAAAAATCCGGAAAAATCTTCCGCAATATCATCAAT AGCCTGCCGGGATTCTCCCCCGTCCCGGACGGCTCAGATCCCGACCTCCTCCTGCTGGAGGGAAAAACGGAAAATGCCAG TCCCCCCGGAAAAGCGGCCATCATATTTGCAGCCAGCGGCAAACCATCTTACGGCGCTGTCACGGCGGAACGGCATCCGC TGACTGACGGGCTGAACTGGAGCGGCCTGCTCATCCCCTCCATCGGTTCCATGAAGCCGGGGGAAAAAGCCGGAGTCCTG CTCTGGCAGGGGGAATCCCCCCTGGCCTGGGTGGACGGGAAACGCCTTTTCCTCAACTGGCCCTGGGAAAAATCCAATGC GGACCGCGTTCCGGCGCCCTTGCTCATGACCCGCAGATTCATGCAATCCGTACAGGAGAATCTGCCCGGAACACATTACG GCAACCTTCCCGGAGGAACTCTCTTATCCATGCCCGCAGGCGGAAAACTCATTCAAACCATGCCCGGGGGAGAACGCCGT GAAACTGTCTTTAACGGCAGGCTCCCGGAAGAAACCGGATATGTGGAAATCTTCCCCCCCGGAGAAGGGAAAACACCCCT GTTCCAAGGCTCCGTCTGGTTCTCCGACGCCCGGATGGGAGATTTTTCCCACTGCTCCACGTTTGACACAGGACTTCCCC AGCCCCATGAAGAGGCGCTCCGGCACATGAAACGTGACCCTCTGGCCCCCCTCTGGCTGGCGCTGGCGTTCCTGGCCCTG ATTCTTTCCTGGCTTCCTCCCGTCCCAGACATCTCCCTGCGCCCATGA
Upstream 100 bases:
>100_bases CCCTGCAAGGGGACGCTGACGGAAGCCCTGTCCGGAGAAGCATTACGGCAGGGTGCCGTGGAACTCTCCTGAACCGCACC CTTTACTCTCCCCCCAAGCC
Downstream 100 bases:
>100_bases TTCAATTCAACACCCCGGAATGGTTCTTCCTGATCCCCCTGCTTCTGGCGGCAGGCTGGAAATACAGGCGTCTGCGCCTG GCCTCCCCCCTGCGCCTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MLPHFTNTTAFWALLAIPLITAIHFLQHKTKTQATATLFLLEALAPEAHEGNAWDRLRISRSFWMQILAVLLLTWVLAAP VWPGKGSGQTVVFILDDSANMAPFRQEAVNAVSEDMDTILRCGIPVTWVLMGSRASGQPLYRGPSVRQALRALDLWQPRE GTHDLAPALRTATAVAGPTGITRLITSTARRVPAGQSARGVGKPLENAGFAGITPVEAAGPGHWRIAVKNNSPSPLRSEI SIHTESGRPPARRSLFLNPGTVTEFEYSLPPESGKAVLRLPTDAFPADNELLLVRSAPAPVAVSMEIPEKSGKIFRNIIN SLPGFSPVPDGSDPDLLLLEGKTENASPPGKAAIIFAASGKPSYGAVTAERHPLTDGLNWSGLLIPSIGSMKPGEKAGVL LWQGESPLAWVDGKRLFLNWPWEKSNADRVPAPLLMTRRFMQSVQENLPGTHYGNLPGGTLLSMPAGGKLIQTMPGGERR ETVFNGRLPEETGYVEIFPPGEGKTPLFQGSVWFSDARMGDFSHCSTFDTGLPQPHEEALRHMKRDPLAPLWLALAFLAL ILSWLPPVPDISLRP
Sequences:
>Translated_575_residues MLPHFTNTTAFWALLAIPLITAIHFLQHKTKTQATATLFLLEALAPEAHEGNAWDRLRISRSFWMQILAVLLLTWVLAAP VWPGKGSGQTVVFILDDSANMAPFRQEAVNAVSEDMDTILRCGIPVTWVLMGSRASGQPLYRGPSVRQALRALDLWQPRE GTHDLAPALRTATAVAGPTGITRLITSTARRVPAGQSARGVGKPLENAGFAGITPVEAAGPGHWRIAVKNNSPSPLRSEI SIHTESGRPPARRSLFLNPGTVTEFEYSLPPESGKAVLRLPTDAFPADNELLLVRSAPAPVAVSMEIPEKSGKIFRNIIN SLPGFSPVPDGSDPDLLLLEGKTENASPPGKAAIIFAASGKPSYGAVTAERHPLTDGLNWSGLLIPSIGSMKPGEKAGVL LWQGESPLAWVDGKRLFLNWPWEKSNADRVPAPLLMTRRFMQSVQENLPGTHYGNLPGGTLLSMPAGGKLIQTMPGGERR ETVFNGRLPEETGYVEIFPPGEGKTPLFQGSVWFSDARMGDFSHCSTFDTGLPQPHEEALRHMKRDPLAPLWLALAFLAL ILSWLPPVPDISLRP >Mature_575_residues MLPHFTNTTAFWALLAIPLITAIHFLQHKTKTQATATLFLLEALAPEAHEGNAWDRLRISRSFWMQILAVLLLTWVLAAP VWPGKGSGQTVVFILDDSANMAPFRQEAVNAVSEDMDTILRCGIPVTWVLMGSRASGQPLYRGPSVRQALRALDLWQPRE GTHDLAPALRTATAVAGPTGITRLITSTARRVPAGQSARGVGKPLENAGFAGITPVEAAGPGHWRIAVKNNSPSPLRSEI SIHTESGRPPARRSLFLNPGTVTEFEYSLPPESGKAVLRLPTDAFPADNELLLVRSAPAPVAVSMEIPEKSGKIFRNIIN SLPGFSPVPDGSDPDLLLLEGKTENASPPGKAAIIFAASGKPSYGAVTAERHPLTDGLNWSGLLIPSIGSMKPGEKAGVL LWQGESPLAWVDGKRLFLNWPWEKSNADRVPAPLLMTRRFMQSVQENLPGTHYGNLPGGTLLSMPAGGKLIQTMPGGERR ETVFNGRLPEETGYVEIFPPGEGKTPLFQGSVWFSDARMGDFSHCSTFDTGLPQPHEEALRHMKRDPLAPLWLALAFLAL ILSWLPPVPDISLRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62265; Mature: 62265
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPHFTNTTAFWALLAIPLITAIHFLQHKTKTQATATLFLLEALAPEAHEGNAWDRLRIS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH RSFWMQILAVLLLTWVLAAPVWPGKGSGQTVVFILDDSANMAPFRQEAVNAVSEDMDTIL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH RCGIPVTWVLMGSRASGQPLYRGPSVRQALRALDLWQPREGTHDLAPALRTATAVAGPTG HCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHH ITRLITSTARRVPAGQSARGVGKPLENAGFAGITPVEAAGPGHWRIAVKNNSPSPLRSEI HHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE SIHTESGRPPARRSLFLNPGTVTEFEYSLPPESGKAVLRLPTDAFPADNELLLVRSAPAP EEEECCCCCCHHHEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEECCCCC VAVSMEIPEKSGKIFRNIINSLPGFSPVPDGSDPDLLLLEGKTENASPPGKAAIIFAASG EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECC KPSYGAVTAERHPLTDGLNWSGLLIPSIGSMKPGEKAGVLLWQGESPLAWVDGKRLFLNW CCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCEEEECCCEEEEEC PWEKSNADRVPAPLLMTRRFMQSVQENLPGTHYGNLPGGTLLSMPAGGKLIQTMPGGERR CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEECCCCCHH ETVFNGRLPEETGYVEIFPPGEGKTPLFQGSVWFSDARMGDFSHCSTFDTGLPQPHEEAL HHEECCCCCCCCCEEEEECCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCHHHHH RHMKRDPLAPLWLALAFLALILSWLPPVPDISLRP HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MLPHFTNTTAFWALLAIPLITAIHFLQHKTKTQATATLFLLEALAPEAHEGNAWDRLRIS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH RSFWMQILAVLLLTWVLAAPVWPGKGSGQTVVFILDDSANMAPFRQEAVNAVSEDMDTIL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH RCGIPVTWVLMGSRASGQPLYRGPSVRQALRALDLWQPREGTHDLAPALRTATAVAGPTG HCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHH ITRLITSTARRVPAGQSARGVGKPLENAGFAGITPVEAAGPGHWRIAVKNNSPSPLRSEI HHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE SIHTESGRPPARRSLFLNPGTVTEFEYSLPPESGKAVLRLPTDAFPADNELLLVRSAPAP EEEECCCCCCHHHEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEECCCCC VAVSMEIPEKSGKIFRNIINSLPGFSPVPDGSDPDLLLLEGKTENASPPGKAAIIFAASG EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECC KPSYGAVTAERHPLTDGLNWSGLLIPSIGSMKPGEKAGVLLWQGESPLAWVDGKRLFLNW CCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCEEEECCCEEEEEC PWEKSNADRVPAPLLMTRRFMQSVQENLPGTHYGNLPGGTLLSMPAGGKLIQTMPGGERR CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEECCCCCHH ETVFNGRLPEETGYVEIFPPGEGKTPLFQGSVWFSDARMGDFSHCSTFDTGLPQPHEEAL HHEECCCCCCCCCEEEEECCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCHHHHH RHMKRDPLAPLWLALAFLALILSWLPPVPDISLRP HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA