Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is rsmA [H]
Identifier: 187735621
GI number: 187735621
Start: 1349585
End: 1350964
Strand: Direct
Name: rsmA [H]
Synonym: Amuc_1126
Alternate gene names: 187735621
Gene position: 1349585-1350964 (Clockwise)
Preceding gene: 187735615
Following gene: 187735622
Centisome position: 50.66
GC content: 57.25
Gene sequence:
>1380_bases ATGAAACCGTCCGAGATCAGGAATGTTCTGGAAGACCATGAAGTGCGCCCCAGCAAGTCCCTGGGGCAGAATTTCCTGAC GGATGAAAATGTGGCCCGCTGGATTGTGGAGCAGCTCGAAATCCGGCCGCAGGATTGCGTGGTGGAGGTAGGGCCTGGAA CCGGCTCCCTGACGGAACATGCCGCACCCCTTTGCCGCAAACTGGTTCTGGTGGAATTTGATTCCCGTCTGGCGGAGTAC CAGAAAGAGCGCTGGGCCGGTGATCCCCATGTGGAGGTTCACCATGCAGACGGCGCTTCCTGGGATCCGCGGGGGCTGTT TGCGGAGGCCCCTGTCAAATTCCTTGGCAATCTTCCCTATTCCGCGGGGGGAGCCATCCTCCAGAATTTCCTGTCCAGGC CCAGTGCTGTGGAACGTGCCGTGGTGATGCTTCAGAAGGAGTTTATCGACCGCATTCTGGCGACGCCGGATGATGATGCC TTCGGGCTGTTGTCCCTGCGCATCCAGAAAAACTGGATTCCCCGTGCCCTCAAAACCATTCCGCCGGAAGCGTTTCATCC CCGTCCGCGTATTGATTCCACCGTGATGCTGCTCACTCCCCGTCCTGCCCGCGAGTTGCCTCCATATGACGACCGCCTGA TGGATGAACTGATGCGCAAGGCTTTTTCCCAGCGGCGCAAACAATTGAAAAAACAGCTCCCCGCTTCTCCTCCGTGGGAG GGCGTGGCTGCTTCCCTGGGGCTTTCCCCTTCCGCCAGGGCTGAGGAATTGAATTTGTCCCAGTGGGTGGAATTGGCGCG CGTTTATGATACCAATCCTCTCAAGGATGTGGCGCAGAGCGGAGATGAATTGTTTGACATCGTGGACGAACTCAATCAGG TGACGGGGCAGGGCACGCGCCGGGAAATACATGAAGGCAGCCTTCGTCATCGCGCCGTACATATGTTCCTGGTCAATAAG CATGGAGCTGTGCTTCTCCAGAAAAGGTCCCTGTGGAAAGACAGGCAGCCGGGCAAATGGGATTCCTCCGCAGCCGGGCA TCTGGATGCCGGGGAAAGTTATGAGGAAGCTGCGGTGCGGGAGCTGAAGGAAGAACTGGGGGTGTCCGGCTGCGGGCTGC AGAAAATCGCGGATTTTGACGCCGGAGAAAATAACGGCTGGGAATTCATCTCCCTCTATGAAGGGCGGTATTCCGGGAAA GTTCGTTTTCCGGCGGCGGAGGTGGACAGCGTGCAGTGGTTTACGCCGGAGCAAATCCAGGCGTGGGTGGAACGCCGTCC GCAGGATTTCTCGCCTGCGTTCATTCCCTGCTGGAATGCATGGCTGGCCGCGAATAGAAAAAATCATTCTAACTCAAATA CATATCATGATAAACCCTGA
Upstream 100 bases:
>100_bases TTCTTTGCCTGCGGCGGTTGGAGCTTCTCCGTTTTCATGCCGGAAACTGCCCCGCTTTTTACTGGCTCCTGACAGGCATT TTTGCGAACATCACTTCATT
Downstream 100 bases:
>100_bases TCAATTATCTCCGGAACAGATCCAGTCCATCCGAACCTGGGCGGAAGAAGGACTGGATTTAAACGCCATCCAGAAAAGGC TGCATGAGGACTTGAACATC
Product: dimethyladenosine transferase
Products: NA
Alternate protein names: 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; 16S rRNA dimethyladenosine transferase; 16S rRNA dimethylase; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase [H]
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MKPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEHAAPLCRKLVLVEFDSRLAEY QKERWAGDPHVEVHHADGASWDPRGLFAEAPVKFLGNLPYSAGGAILQNFLSRPSAVERAVVMLQKEFIDRILATPDDDA FGLLSLRIQKNWIPRALKTIPPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQLPASPPWE GVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVAQSGDELFDIVDELNQVTGQGTRREIHEGSLRHRAVHMFLVNK HGAVLLQKRSLWKDRQPGKWDSSAAGHLDAGESYEEAAVRELKEELGVSGCGLQKIADFDAGENNGWEFISLYEGRYSGK VRFPAAEVDSVQWFTPEQIQAWVERRPQDFSPAFIPCWNAWLAANRKNHSNSNTYHDKP
Sequences:
>Translated_459_residues MKPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEHAAPLCRKLVLVEFDSRLAEY QKERWAGDPHVEVHHADGASWDPRGLFAEAPVKFLGNLPYSAGGAILQNFLSRPSAVERAVVMLQKEFIDRILATPDDDA FGLLSLRIQKNWIPRALKTIPPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQLPASPPWE GVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVAQSGDELFDIVDELNQVTGQGTRREIHEGSLRHRAVHMFLVNK HGAVLLQKRSLWKDRQPGKWDSSAAGHLDAGESYEEAAVRELKEELGVSGCGLQKIADFDAGENNGWEFISLYEGRYSGK VRFPAAEVDSVQWFTPEQIQAWVERRPQDFSPAFIPCWNAWLAANRKNHSNSNTYHDKP >Mature_459_residues MKPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEHAAPLCRKLVLVEFDSRLAEY QKERWAGDPHVEVHHADGASWDPRGLFAEAPVKFLGNLPYSAGGAILQNFLSRPSAVERAVVMLQKEFIDRILATPDDDA FGLLSLRIQKNWIPRALKTIPPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQLPASPPWE GVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVAQSGDELFDIVDELNQVTGQGTRREIHEGSLRHRAVHMFLVNK HGAVLLQKRSLWKDRQPGKWDSSAAGHLDAGESYEEAAVRELKEELGVSGCGLQKIADFDAGENNGWEFISLYEGRYSGK VRFPAAEVDSVQWFTPEQIQAWVERRPQDFSPAFIPCWNAWLAANRKNHSNSNTYHDKP
Specific function: Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits [H]
COG id: COG0030
COG function: function code J; Dimethyladenosine transferase (rRNA methylation)
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily [H]
Homologues:
Organism=Homo sapiens, GI7657198, Length=219, Percent_Identity=28.7671232876712, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI156415992, Length=293, Percent_Identity=26.6211604095563, Blast_Score=79, Evalue=1e-14, Organism=Escherichia coli, GI1786236, Length=264, Percent_Identity=32.1969696969697, Blast_Score=136, Evalue=3e-33, Organism=Escherichia coli, GI1788637, Length=171, Percent_Identity=32.7485380116959, Blast_Score=81, Evalue=1e-16, Organism=Caenorhabditis elegans, GI25146882, Length=212, Percent_Identity=31.1320754716981, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25141369, Length=322, Percent_Identity=23.6024844720497, Blast_Score=81, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6324989, Length=216, Percent_Identity=29.1666666666667, Blast_Score=90, Evalue=6e-19, Organism=Drosophila melanogaster, GI21358017, Length=261, Percent_Identity=28.735632183908, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357273, Length=292, Percent_Identity=30.1369863013699, Blast_Score=88, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023165 - InterPro: IPR020596 - InterPro: IPR001737 - InterPro: IPR020598 - InterPro: IPR011530 [H]
Pfam domain/function: PF00398 RrnaAD [H]
EC number: =2.1.1.182 [H]
Molecular weight: Translated: 51880; Mature: 51880
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: PS00893 NUDIX ; PS01131 RRNA_A_DIMETH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEH CCHHHHHHHHHHCCCCCCHHHCCHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHH AAPLCRKLVLVEFDSRLAEYQKERWAGDPHVEVHHADGASWDPRGLFAEAPVKFLGNLPY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHCHHHHHCCCCC SAGGAILQNFLSRPSAVERAVVMLQKEFIDRILATPDDDAFGLLSLRIQKNWIPRALKTI CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHC PPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQLPASPPWE CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVAQSGDELFDIVDELNQVTGQGTR HHHHHCCCCCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHH REIHEGSLRHRAVHMFLVNKHGAVLLQKRSLWKDRQPGKWDSSAAGHLDAGESYEEAAVR HHHHHHHHHHHEEEEEEECCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH ELKEELGVSGCGLQKIADFDAGENNGWEFISLYEGRYSGKVRFPAAEVDSVQWFTPEQIQ HHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHH AWVERRPQDFSPAFIPCWNAWLAANRKNHSNSNTYHDKP HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MKPSEIRNVLEDHEVRPSKSLGQNFLTDENVARWIVEQLEIRPQDCVVEVGPGTGSLTEH CCHHHHHHHHHHCCCCCCHHHCCHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHH AAPLCRKLVLVEFDSRLAEYQKERWAGDPHVEVHHADGASWDPRGLFAEAPVKFLGNLPY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHCHHHHHCCCCC SAGGAILQNFLSRPSAVERAVVMLQKEFIDRILATPDDDAFGLLSLRIQKNWIPRALKTI CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHC PPEAFHPRPRIDSTVMLLTPRPARELPPYDDRLMDELMRKAFSQRRKQLKKQLPASPPWE CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GVAASLGLSPSARAEELNLSQWVELARVYDTNPLKDVAQSGDELFDIVDELNQVTGQGTR HHHHHCCCCCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHH REIHEGSLRHRAVHMFLVNKHGAVLLQKRSLWKDRQPGKWDSSAAGHLDAGESYEEAAVR HHHHHHHHHHHEEEEEEECCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH ELKEELGVSGCGLQKIADFDAGENNGWEFISLYEGRYSGKVRFPAAEVDSVQWFTPEQIQ HHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHH AWVERRPQDFSPAFIPCWNAWLAANRKNHSNSNTYHDKP HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA