Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735615
Identifier: 187735615
GI number: 187735615
Start: 1340007
End: 1342397
Strand: Direct
Name: 187735615
Synonym: Amuc_1120
Alternate gene names: NA
Gene position: 1340007-1342397 (Clockwise)
Preceding gene: 187735613
Following gene: 187735621
Centisome position: 50.3
GC content: 55.92
Gene sequence:
>2391_bases ATGCATTTCCAATCTCTATATTTATCTGCCGTGGCGGTAAGTGCCGTTTCTTTCGGGTGGGGGGCTCTGGATAAGCCTTC CGCCTCCAATTTGATCTGGTCTGATGAACCGGCCGTAGTTGTTTATCCGCAGGAAGACAAAAATTCCGAGGGCAGTTTTG GCAAGTACAGAAAGCCTGCCTCCGTCTGGGAAGCGGAGGGGTATCCCATTGGCAATGGTCGCGTTGGAGCCATGATTTTC AGCGCTCCCGGCCGCGAGCGGCTGGCCCTGAATGAAATCAGCCTTTGGTCCGGAGGTGCCAATCCGGGGGGAGGGTACGG TTACGGGCCTGATGCCGGAACGAACCAGTTCGGCAACTATCTTCCCTTTGGGGATTTGTTTGTGGACTTTAAAAAAGGCG ACCAACCGGCTTCCCTGTCTGTGGAAGATTTTACGCGCTCCCTGGATCTCCGGGACGGCATTCATAAAGTGAATTACAAG GCGGACGGCGTAACGTATGACCGGGAGGCATTCTCCAGCACGCCTGCCAACGTCCTGGTGCTGAATTATAAAGCCAGCAA ACCCGGCCAATTCAGCGCGGATTTTTCCGTTAACAGCCAGCTTGGAGCAGATATTTCCGCCAAGGGATCCGTCATCACCT GGAAGGGGATGTTGAAAAACGGCATGAATTATGAAGGCCGCGTTTTGATCCGTCCCAAAGGCGGTACGCTTTCTGCCTCG GGAGATAAAATTTCCGTGAAAAATGCGGATTCCTGCATGGTCGTCATCGCCATGGAGACGGATTACCTGATGGATTATAA AAAGGACTGGAAGGGTGAATCTCCCTCCAGGAAGCTGGACCGTTATGCGGCCAAAGCCGCTTCTGCGGATTATGCCGCCC TGAAACAGGCCCACATTTCCCAGTACAAGTCCATGTTTGACCGGGTGAAGGTCAACTTCGGAAAAACGGAGGAGGATGTA GCCAAGCTGCCTACGCCAAAACGTCTGGAGGCCTATAAGAAAAATCCGGCAGACCCCGATTTGGAGGAAACCATGTTCCA GTTTGGCCGATATCTGCTGTTGTCCAGTTCCCGGCCCGGCACGCTACCGGCCAACCTGCAAGGGTTGTGGAACGATTATG TCAAACCGCCGTGGGCCTGCGACTACCATAACAACATCAACGTCCAGATGGCGTATTGGGGGGCGGAACCCGCCAATCTT TCCGAATGCCATGAGGCCCTGGTCAATTATGTGGAGGCAATGGCCCCCGGCTGCCGGGACGCTTCCCAGGCGAACAAGGG GTTCAATACCAAGGACGGTAAACCCGTGCGCGGCTGGACGGTGCGCACCTCCCAGAATATCTTCGGTGGCAACGGCTGGC AGTGGAACATTCCCGGTGCGGCCTGGTATGCGCTGCATATATGGGAACATTATGCATTTACCGGTGATAGAAAGTATCTG GAAAAACAGGCGTATCCCCTGATGAAGGAAATCTGTCATTTCTGGGAAGACCATTTGAAGGAACTGGGAGCCGGGGGCGA AGGGTTCAAGACAAACGGCAAGGATCCGAGCGAAGAGGAGAAGAAGGATCTGGCCGATGTGAAAGCCGGAACTCTGGTGG CTCCCAATGGCTGGTCTCCCGAACATGGGCCGCGTGAAGACGGTGTGATGCATGACCAGCAGCTCATTGCGGAGCTTTTC TCCAATACCATCAAAGCCGCCCGCATTCTGGGCAAGGACGCCGCCTGGGCCAAGAGCCTGGAGGGCAAGCTGAAAAGGCT GGCCGGCAACAAGATAGGCAAGGAAGGGAATCTTCAGGAATGGATGATTGACCGCATTCCCAAGACGGACCACCGCCATA CGTCCCACCTTTTTGCCGTTTTCCCCGGCAACCAGATCAGCAAGCTCAAGACGCCCAAGCTGGCGGAAGCCGCCCGCCTT TCCTTGGAATGGCGCGGCACGACCGGAGACAGCCGCCGTTCCTGGACGTGGCCGTGGCGCACGGCTCTGTGGGCCCGCCT GGGCGAGGGGAACAAGGCTCATGAAATGGTTCAGGGACTCTTGAAATTCAACACTTTGCCGAATATGCTGACTACTCATC CCCCTATGCAGATGGACGGCAACTTCGGCATTGTAGGCGGCATTTGTGAAATGTTGGTGCAATCCCATGCCGGGGGCCTG GACATCATGCCCTCTCCCGTGGAAGCGTGGCCTGAAGGTTCCGTGAAAGGGCTGAAAGCCCGGGGCAACGTCACGGTGGA TTTTTCCTGGAAGGACGGCAAGGTAAGCAACGTGAAGTTGTATTCCGCCCAACCCAAGGTGTTGCCCGTGCGCGTTAACG GGAAGATGACCCGCATGAAAACCCTGCCGCTGAAATCGGGAGCGGGATCTTCGCAGCCCGCGGCCAGGTAA
Upstream 100 bases:
>100_bases AATGGGGGAAAGAATCCGTCATGTGGCGGCCGATAAGTTCGGAATGGCTGAAAGATAGAGGTTGCGAAGGCAGTAAATAT GTGACATTGTTTATTAAAGC
Downstream 100 bases:
>100_bases AAAAGGAAATCCATAATCCAGTTTTAGTTCGGGAACTAAAAATAGTCATGGCTTCCAGTCCTTTCGTTAGGGCTGGGAGC CTTTTTTATCCCGGACCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Large Secreted Protein; Fibronectin Type III Domain Protein; Twin-Arginine Translocation Pathway Signal; Glycoside Hydrolase Family Protein; Six-Hairpin Glycosidase; 1 2-Alpha-L-Fucosidase; Alpha/Beta Hydrolase Domain-Containing Protein; Alpha-Fucosidase; Fibronectin Type III Domain-Containing Protein; 1 2-A-L-Fucosidase; Ricin B Lectin; Coagulation Factor 5/8 Type Domain-Containing Protein; Glycosyl Hydrolase; F5/8 Type C Domain-Containing Protein; Candidate Alpha-L-Fucosidase; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 796; Mature: 796
Protein sequence:
>796_residues MHFQSLYLSAVAVSAVSFGWGALDKPSASNLIWSDEPAVVVYPQEDKNSEGSFGKYRKPASVWEAEGYPIGNGRVGAMIF SAPGRERLALNEISLWSGGANPGGGYGYGPDAGTNQFGNYLPFGDLFVDFKKGDQPASLSVEDFTRSLDLRDGIHKVNYK ADGVTYDREAFSSTPANVLVLNYKASKPGQFSADFSVNSQLGADISAKGSVITWKGMLKNGMNYEGRVLIRPKGGTLSAS GDKISVKNADSCMVVIAMETDYLMDYKKDWKGESPSRKLDRYAAKAASADYAALKQAHISQYKSMFDRVKVNFGKTEEDV AKLPTPKRLEAYKKNPADPDLEETMFQFGRYLLLSSSRPGTLPANLQGLWNDYVKPPWACDYHNNINVQMAYWGAEPANL SECHEALVNYVEAMAPGCRDASQANKGFNTKDGKPVRGWTVRTSQNIFGGNGWQWNIPGAAWYALHIWEHYAFTGDRKYL EKQAYPLMKEICHFWEDHLKELGAGGEGFKTNGKDPSEEEKKDLADVKAGTLVAPNGWSPEHGPREDGVMHDQQLIAELF SNTIKAARILGKDAAWAKSLEGKLKRLAGNKIGKEGNLQEWMIDRIPKTDHRHTSHLFAVFPGNQISKLKTPKLAEAARL SLEWRGTTGDSRRSWTWPWRTALWARLGEGNKAHEMVQGLLKFNTLPNMLTTHPPMQMDGNFGIVGGICEMLVQSHAGGL DIMPSPVEAWPEGSVKGLKARGNVTVDFSWKDGKVSNVKLYSAQPKVLPVRVNGKMTRMKTLPLKSGAGSSQPAAR
Sequences:
>Translated_796_residues MHFQSLYLSAVAVSAVSFGWGALDKPSASNLIWSDEPAVVVYPQEDKNSEGSFGKYRKPASVWEAEGYPIGNGRVGAMIF SAPGRERLALNEISLWSGGANPGGGYGYGPDAGTNQFGNYLPFGDLFVDFKKGDQPASLSVEDFTRSLDLRDGIHKVNYK ADGVTYDREAFSSTPANVLVLNYKASKPGQFSADFSVNSQLGADISAKGSVITWKGMLKNGMNYEGRVLIRPKGGTLSAS GDKISVKNADSCMVVIAMETDYLMDYKKDWKGESPSRKLDRYAAKAASADYAALKQAHISQYKSMFDRVKVNFGKTEEDV AKLPTPKRLEAYKKNPADPDLEETMFQFGRYLLLSSSRPGTLPANLQGLWNDYVKPPWACDYHNNINVQMAYWGAEPANL SECHEALVNYVEAMAPGCRDASQANKGFNTKDGKPVRGWTVRTSQNIFGGNGWQWNIPGAAWYALHIWEHYAFTGDRKYL EKQAYPLMKEICHFWEDHLKELGAGGEGFKTNGKDPSEEEKKDLADVKAGTLVAPNGWSPEHGPREDGVMHDQQLIAELF SNTIKAARILGKDAAWAKSLEGKLKRLAGNKIGKEGNLQEWMIDRIPKTDHRHTSHLFAVFPGNQISKLKTPKLAEAARL SLEWRGTTGDSRRSWTWPWRTALWARLGEGNKAHEMVQGLLKFNTLPNMLTTHPPMQMDGNFGIVGGICEMLVQSHAGGL DIMPSPVEAWPEGSVKGLKARGNVTVDFSWKDGKVSNVKLYSAQPKVLPVRVNGKMTRMKTLPLKSGAGSSQPAAR >Mature_796_residues MHFQSLYLSAVAVSAVSFGWGALDKPSASNLIWSDEPAVVVYPQEDKNSEGSFGKYRKPASVWEAEGYPIGNGRVGAMIF SAPGRERLALNEISLWSGGANPGGGYGYGPDAGTNQFGNYLPFGDLFVDFKKGDQPASLSVEDFTRSLDLRDGIHKVNYK ADGVTYDREAFSSTPANVLVLNYKASKPGQFSADFSVNSQLGADISAKGSVITWKGMLKNGMNYEGRVLIRPKGGTLSAS GDKISVKNADSCMVVIAMETDYLMDYKKDWKGESPSRKLDRYAAKAASADYAALKQAHISQYKSMFDRVKVNFGKTEEDV AKLPTPKRLEAYKKNPADPDLEETMFQFGRYLLLSSSRPGTLPANLQGLWNDYVKPPWACDYHNNINVQMAYWGAEPANL SECHEALVNYVEAMAPGCRDASQANKGFNTKDGKPVRGWTVRTSQNIFGGNGWQWNIPGAAWYALHIWEHYAFTGDRKYL EKQAYPLMKEICHFWEDHLKELGAGGEGFKTNGKDPSEEEKKDLADVKAGTLVAPNGWSPEHGPREDGVMHDQQLIAELF SNTIKAARILGKDAAWAKSLEGKLKRLAGNKIGKEGNLQEWMIDRIPKTDHRHTSHLFAVFPGNQISKLKTPKLAEAARL SLEWRGTTGDSRRSWTWPWRTALWARLGEGNKAHEMVQGLLKFNTLPNMLTTHPPMQMDGNFGIVGGICEMLVQSHAGGL DIMPSPVEAWPEGSVKGLKARGNVTVDFSWKDGKVSNVKLYSAQPKVLPVRVNGKMTRMKTLPLKSGAGSSQPAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87724; Mature: 87724
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFQSLYLSAVAVSAVSFGWGALDKPSASNLIWSDEPAVVVYPQEDKNSEGSFGKYRKPA CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCC SVWEAEGYPIGNGRVGAMIFSAPGRERLALNEISLWSGGANPGGGYGYGPDAGTNQFGNY CCCCCCCEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC LPFGDLFVDFKKGDQPASLSVEDFTRSLDLRDGIHKVNYKADGVTYDREAFSSTPANVLV CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEECCEECCCEEECHHHHCCCCCEEEE LNYKASKPGQFSADFSVNSQLGADISAKGSVITWKGMLKNGMNYEGRVLIRPKGGTLSAS EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCEEEEEECCCEEECC GDKISVKNADSCMVVIAMETDYLMDYKKDWKGESPSRKLDRYAAKAASADYAALKQAHIS CCEEEEECCCCEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH QYKSMFDRVKVNFGKTEEDVAKLPTPKRLEAYKKNPADPDLEETMFQFGRYLLLSSSRPG HHHHHHHHEEECCCCCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCC TLPANLQGLWNDYVKPPWACDYHNNINVQMAYWGAEPANLSECHEALVNYVEAMAPGCRD CCCHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC ASQANKGFNTKDGKPVRGWTVRTSQNIFGGNGWQWNIPGAAWYALHIWEHYAFTGDRKYL HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCEEEEEEEHHHHEECCCHHHH EKQAYPLMKEICHFWEDHLKELGAGGEGFKTNGKDPSEEEKKDLADVKAGTLVAPNGWSP HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCC EHGPREDGVMHDQQLIAELFSNTIKAARILGKDAAWAKSLEGKLKRLAGNKIGKEGNLQE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH WMIDRIPKTDHRHTSHLFAVFPGNQISKLKTPKLAEAARLSLEWRGTTGDSRRSWTWPWR HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCCHH TALWARLGEGNKAHEMVQGLLKFNTLPNMLTTHPPMQMDGNFGIVGGICEMLVQSHAGGL HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCCC DIMPSPVEAWPEGSVKGLKARGNVTVDFSWKDGKVSNVKLYSAQPKVLPVRVNGKMTRMK CCCCCCHHHCCCCCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEE TLPLKSGAGSSQPAAR ECCCCCCCCCCCCCCC >Mature Secondary Structure MHFQSLYLSAVAVSAVSFGWGALDKPSASNLIWSDEPAVVVYPQEDKNSEGSFGKYRKPA CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCC SVWEAEGYPIGNGRVGAMIFSAPGRERLALNEISLWSGGANPGGGYGYGPDAGTNQFGNY CCCCCCCEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC LPFGDLFVDFKKGDQPASLSVEDFTRSLDLRDGIHKVNYKADGVTYDREAFSSTPANVLV CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEECCEECCCEEECHHHHCCCCCEEEE LNYKASKPGQFSADFSVNSQLGADISAKGSVITWKGMLKNGMNYEGRVLIRPKGGTLSAS EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCEEEEEECCCEEECC GDKISVKNADSCMVVIAMETDYLMDYKKDWKGESPSRKLDRYAAKAASADYAALKQAHIS CCEEEEECCCCEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH QYKSMFDRVKVNFGKTEEDVAKLPTPKRLEAYKKNPADPDLEETMFQFGRYLLLSSSRPG HHHHHHHHEEECCCCCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCC TLPANLQGLWNDYVKPPWACDYHNNINVQMAYWGAEPANLSECHEALVNYVEAMAPGCRD CCCHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC ASQANKGFNTKDGKPVRGWTVRTSQNIFGGNGWQWNIPGAAWYALHIWEHYAFTGDRKYL HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCEEEEEEEHHHHEECCCHHHH EKQAYPLMKEICHFWEDHLKELGAGGEGFKTNGKDPSEEEKKDLADVKAGTLVAPNGWSP HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCC EHGPREDGVMHDQQLIAELFSNTIKAARILGKDAAWAKSLEGKLKRLAGNKIGKEGNLQE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH WMIDRIPKTDHRHTSHLFAVFPGNQISKLKTPKLAEAARLSLEWRGTTGDSRRSWTWPWR HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCCHH TALWARLGEGNKAHEMVQGLLKFNTLPNMLTTHPPMQMDGNFGIVGGICEMLVQSHAGGL HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCCC DIMPSPVEAWPEGSVKGLKARGNVTVDFSWKDGKVSNVKLYSAQPKVLPVRVNGKMTRMK CCCCCCHHHCCCCCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEE TLPLKSGAGSSQPAAR ECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA