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The map label for this gene is ysdC [H]

Identifier: 187735598

GI number: 187735598

Start: 1318190

End: 1319269

Strand: Direct

Name: ysdC [H]

Synonym: Amuc_1103

Alternate gene names: 187735598

Gene position: 1318190-1319269 (Clockwise)

Preceding gene: 187735590

Following gene: 187735599

Centisome position: 49.48

GC content: 60.56

Gene sequence:

>1080_bases
ATGGCGATTGATTCTGATCTGCTGAAGAAGTTTTCAGAGGCCCACGGTATTTCGGGGCATGAGGATGAAGTGAGAAGCCT
GGTGGCTCAGGAACTTGAAGGATATGGGGAATTTTCTTCCGATGGTTCCGGCAGCCTGTTCTGCACCGGCGGCGAGGCCG
GCCCCCGCGTGATGCTGGCCGCCCACATGGATGAAATAGGCTTTCTGGTGCAGAATATAGCGTCGAACGGTTTCCTTCAG
TTGGTGGGGATAGGCGGCTGGTGGCCGCATACCCTGTTAAGCCAGCGTGTCTTGGTAAAAACCCGCTCGGGCCGCGGCAT
CCGGGGGGTGATTGGTTCCAAGCCTCCCCATTTTCTGCCGGAAAGCCAGCGCAACAGTGTCATGAGCATGGAAGCCCTGT
TTGTGGACGTGGGCGCTGAAAGCGCGGAACAGGTGAAGAATGAATTCGGTATTCACCTGGGGGATCCCGTGGTGCCGGAC
GTGAGATTCTCCCCGTTGGAAAATCCGTTCCGGGTCATGGGGAAAGCCTTTGACAACCGCGCCGGTCTTTCTGTGATGAT
AGAGGCATTCAAGAAATTATGCCGGGAAGGGCATCCCAACACCCTGATTGCCGCCGCGACGGTTCAGGAGGAGGTGGGCA
CGCGGGGCGCCAGGACGGCCGGCGTCGCCATGCAACCGGATTGCGTGATTGTTCTGGAAGGGCCGCCGGCAGACGACACC
CCCGGGTTTGCCGTGACGGATTCCCAAGGGGCCTTGGGCGGAGGCGTGCAGATCAGGCTGTTTGACCCCACGGCCATCAC
CAATCCCCGGCTGGCCGCCCTGGCCGAAAAAACGGCTTTGGATGCGGGCATCCCATTCCAGTTGACGGTGCGCCGTTCCG
GCGGAACGGATGCGGCGGCCCTGCATCTTTCCGGAAAGGGTGTTCCCACTATTGTGCTGGGAATTCCCACCCGGTACATT
CATGCCCATAACGGCGTGCTGGATCTGCGGGACTACCGCGCCGCGGTGGAATTGACGGTGGCTCTGGCCCGTTCCCTGGA
CCAGGAGGCCGTGGAAGCCCTTACCCACTACCTGCCCTGA

Upstream 100 bases:

>100_bases
ACACGGCTCCGCCCGACGGTTCTGCCCGGGCGGTCAAGAAAAAAACATGCGGCATGGCTGCGGGCTTGACCTGGCAGAGG
TGTTTCCACATGCTCGGCCC

Downstream 100 bases:

>100_bases
AAGAAACGCTCATGAATCCGACCGTTTACGTACATGATCTGGACCCTGTCATCTGGCAGATAACGGACTCAATTGCCCTG
CGCTGGTATGGCCTGGCCTA

Product: Glutamyl aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MAIDSDLLKKFSEAHGISGHEDEVRSLVAQELEGYGEFSSDGSGSLFCTGGEAGPRVMLAAHMDEIGFLVQNIASNGFLQ
LVGIGGWWPHTLLSQRVLVKTRSGRGIRGVIGSKPPHFLPESQRNSVMSMEALFVDVGAESAEQVKNEFGIHLGDPVVPD
VRFSPLENPFRVMGKAFDNRAGLSVMIEAFKKLCREGHPNTLIAAATVQEEVGTRGARTAGVAMQPDCVIVLEGPPADDT
PGFAVTDSQGALGGGVQIRLFDPTAITNPRLAALAEKTALDAGIPFQLTVRRSGGTDAAALHLSGKGVPTIVLGIPTRYI
HAHNGVLDLRDYRAAVELTVALARSLDQEAVEALTHYLP

Sequences:

>Translated_359_residues
MAIDSDLLKKFSEAHGISGHEDEVRSLVAQELEGYGEFSSDGSGSLFCTGGEAGPRVMLAAHMDEIGFLVQNIASNGFLQ
LVGIGGWWPHTLLSQRVLVKTRSGRGIRGVIGSKPPHFLPESQRNSVMSMEALFVDVGAESAEQVKNEFGIHLGDPVVPD
VRFSPLENPFRVMGKAFDNRAGLSVMIEAFKKLCREGHPNTLIAAATVQEEVGTRGARTAGVAMQPDCVIVLEGPPADDT
PGFAVTDSQGALGGGVQIRLFDPTAITNPRLAALAEKTALDAGIPFQLTVRRSGGTDAAALHLSGKGVPTIVLGIPTRYI
HAHNGVLDLRDYRAAVELTVALARSLDQEAVEALTHYLP
>Mature_358_residues
AIDSDLLKKFSEAHGISGHEDEVRSLVAQELEGYGEFSSDGSGSLFCTGGEAGPRVMLAAHMDEIGFLVQNIASNGFLQL
VGIGGWWPHTLLSQRVLVKTRSGRGIRGVIGSKPPHFLPESQRNSVMSMEALFVDVGAESAEQVKNEFGIHLGDPVVPDV
RFSPLENPFRVMGKAFDNRAGLSVMIEAFKKLCREGHPNTLIAAATVQEEVGTRGARTAGVAMQPDCVIVLEGPPADDTP
GFAVTDSQGALGGGVQIRLFDPTAITNPRLAALAEKTALDAGIPFQLTVRRSGGTDAAALHLSGKGVPTIVLGIPTRYIH
AHNGVLDLRDYRAAVELTVALARSLDQEAVEALTHYLP

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=357, Percent_Identity=36.6946778711485, Blast_Score=241, Evalue=4e-65,
Organism=Escherichia coli, GI1788727, Length=362, Percent_Identity=36.1878453038674, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI87082417, Length=345, Percent_Identity=30.4347826086957, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38133; Mature: 38002

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDSDLLKKFSEAHGISGHEDEVRSLVAQELEGYGEFSSDGSGSLFCTGGEAGPRVMLA
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEE
AHMDEIGFLVQNIASNGFLQLVGIGGWWPHTLLSQRVLVKTRSGRGIRGVIGSKPPHFLP
EHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHCCEEEEEECCCCCEEECCCCCCCCCCC
ESQRNSVMSMEALFVDVGAESAEQVKNEFGIHLGDPVVPDVRFSPLENPFRVMGKAFDNR
CCCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
AGLSVMIEAFKKLCREGHPNTLIAAATVQEEVGTRGARTAGVAMQPDCVIVLEGPPADDT
CCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCEECCCEEEEECCCCCCCC
PGFAVTDSQGALGGGVQIRLFDPTAITNPRLAALAEKTALDAGIPFQLTVRRSGGTDAAA
CCEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE
LHLSGKGVPTIVLGIPTRYIHAHNGVLDLRDYRAAVELTVALARSLDQEAVEALTHYLP
EEECCCCCCEEEEECCEEEEEECCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
AIDSDLLKKFSEAHGISGHEDEVRSLVAQELEGYGEFSSDGSGSLFCTGGEAGPRVMLA
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEE
AHMDEIGFLVQNIASNGFLQLVGIGGWWPHTLLSQRVLVKTRSGRGIRGVIGSKPPHFLP
EHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHCCEEEEEECCCCCEEECCCCCCCCCCC
ESQRNSVMSMEALFVDVGAESAEQVKNEFGIHLGDPVVPDVRFSPLENPFRVMGKAFDNR
CCCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
AGLSVMIEAFKKLCREGHPNTLIAAATVQEEVGTRGARTAGVAMQPDCVIVLEGPPADDT
CCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCEECCCEEEEECCCCCCCC
PGFAVTDSQGALGGGVQIRLFDPTAITNPRLAALAEKTALDAGIPFQLTVRRSGGTDAAA
CCEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE
LHLSGKGVPTIVLGIPTRYIHAHNGVLDLRDYRAAVELTVALARSLDQEAVEALTHYLP
EEECCCCCCEEEEECCEEEEEECCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]