Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735596
Identifier: 187735596
GI number: 187735596
Start: 1315394
End: 1317178
Strand: Reverse
Name: 187735596
Synonym: Amuc_1101
Alternate gene names: NA
Gene position: 1317178-1315394 (Counterclockwise)
Preceding gene: 187735597
Following gene: 187735595
Centisome position: 49.44
GC content: 56.69
Gene sequence:
>1785_bases ATGGGCGTCTTTTCCAAGACTTCCAAAGACGCCCTTATCCTGGACCGCTATGCTACGCGCCTCGTAGTGCTGGACCCGTC AGCAGAAGGTTTGCGCCTGACGAAAATAGGGGAAGCCATCGCCGACCTCGTCCAGGAACTCAACGTCAAAGGAAGCGTCG TCAACTATTCCGTTTCCGGACAATCCGTTTTCATCCGCTTCGTCAAGCTTCCGGCTCTGGACGATACCGATGTGGAACAG CTCATCCGCTTTGAAGCCCAGCAGCACGTCCCCTTCCCGCTGGACGAAGTCGTGTGGGACTACCATCTGCTTCCCGCCAA AGGTCTGGAACGGGAAGCCATCCTGGTTGCCATCAAGGCGGAAGACCTGGACTCCCTGAATGATGAAATCGTCTCCCACG GCCTTTCCACCGGCAAAGTGGACTGCGCGCTTACCTCTCTGTACAATGCGTATGTGGACAGTTATCCGGATGAGAAAGAA CCGGTCATGCTCATCGACATCGGCGCCAAATCCACGGATTTGATTTACAGCGAACAGGGACGTTTCTTCACCCGCAGCAT TTCCGCGGGGGGAATCTTCGTAACCTCCGCTATCGCCCGTGAATTCAATATTCCCTTCCTGGAAGCGGAACGCTTGAAAA CCACCAGCGGGCTCGTTTCCATGAGCAACGGGCAAACGGAAGGGCTGGATCCCGCCACGGCCAATCTGGCTACCGTCATC CGTACGGCCATGACCAGGCTTGCCTCAGAAATCCAGCGGACCACCAACCATTACCGCGCCCAGATGAGCGGAAGCGCTCC CGTCAAGGCATACCTGTGCGGCGGCGGAGCTTCCCTGCCCTATACCAAGGAATTCCTGGAAGATAAACTGGGCATTCCGA TCTCCTTCTTCAACCCCATGCACAACGTGGGCGTGGGCTCCGGCGTGGACGTGAACACCATCTCCCGCGAAGCCTTCATC CTGGGCGGATTGATCGGCACCGCCATTCACTCCATCGGCAGGGCCTCCCTCAATATTGACCTGGAACCCACCGCAGTTGC CAAAAAGCGGGCCAACCAGAAAAAAATGCCCGCCATCATCGCCGGGGCAGCCATTGCCGTTCTTGGTGCCGCAGCTTATG CCGTCACAGGATATATGGGCGAGAAAAAGGCGGAGGAAATCCTCGCCGGCGTCCAGCCCACCGTTACTTCCATCAAATCG GCACAATCCGCCCTGCGCCAGAAAGAACAGGAGCTGAAAAAACTGGACTCCACCCTGGCTTCCTACCAGCAGCTCACGCT TCAGCGCTACGGCTACGCGGACATCATCAGGCACCTGCTGGAACAGTCGGAACACAAGGATTATCCCTACTGGTTTACGG ATTTTGAACCGCTGGCCCACTTCAATCCGGAGGATACCACCCAAATTACGGGATATTCCGTCATCAAGGATTCCTTCACA TCGGACAAAAATACATCCCTGGTGGATGACATCAGGACGGAGGCCTCCGCCAACGCATCCAGCGAGGATGAAGCGGGCGT TTACAGCGTCAACGCCATCCGCCTGACCGGATTCGTCCGGCGCAGCCTGGGCGGCCAGAGAATCATCCAGGACCTCCAGG CAAAAATAGACGGGAACAAGGAATCCCTGTTCACTTTCAAGCCCGGAGACGTCAAACTGGAAGCCCGCCAGATCATGGAA CTGGGAGCCAAGGACGCCAAGGTGGACGCGGCGGCAGGGGCCTTTGTACCCTTCAAGCTGGTGCTTCCGTTAAAAACGCC CATTCCCGTGAACTTTAACAAATAA
Upstream 100 bases:
>100_bases CGTTCCATTAATTCTATCATTTCATCTTATTTAACAGAAATCACCCATGGCTAATTCACGACCAATCGTCGCATTAAACG TAGGTTCCCAGAGAGTTTCA
Downstream 100 bases:
>100_bases GATTACCCAACCCGAACAAGACATATTTTATGAGCAATTGGATTACAGACAACAAGCCCGCCGCCATGGTCGCGGGCGTG GGACTTCTCTTATTCCTGGG
Product: cell division protein FtsA
Products: NA
Alternate protein names: Tfp Pilus Assembly Protein ATPase PilM; Type IV Pilus Biogenesis Protein PilM; Fimbrial Assembly Protein PilM; Fimbrial Assembly Family Protein; Protein FtsA; Type 4 Fimbrial Biogenesis Protein PilM; Type Iv Pilus Assembly Protein Pilm; Fimbrial Assembly Protein; Tfp Pilus Assembly Protein; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Fimbrial Assembly Membrane Protein; Type IV Pilus Biogenesis Protein TapM; Tfp Pilus Assembly Protein ATPase PilM-Like Protein; Pili Assembly Protein; Competence Protein PilM; Type IV Pilus Biogenesis ATPase PilM; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 594; Mature: 593
Protein sequence:
>594_residues MGVFSKTSKDALILDRYATRLVVLDPSAEGLRLTKIGEAIADLVQELNVKGSVVNYSVSGQSVFIRFVKLPALDDTDVEQ LIRFEAQQHVPFPLDEVVWDYHLLPAKGLEREAILVAIKAEDLDSLNDEIVSHGLSTGKVDCALTSLYNAYVDSYPDEKE PVMLIDIGAKSTDLIYSEQGRFFTRSISAGGIFVTSAIAREFNIPFLEAERLKTTSGLVSMSNGQTEGLDPATANLATVI RTAMTRLASEIQRTTNHYRAQMSGSAPVKAYLCGGGASLPYTKEFLEDKLGIPISFFNPMHNVGVGSGVDVNTISREAFI LGGLIGTAIHSIGRASLNIDLEPTAVAKKRANQKKMPAIIAGAAIAVLGAAAYAVTGYMGEKKAEEILAGVQPTVTSIKS AQSALRQKEQELKKLDSTLASYQQLTLQRYGYADIIRHLLEQSEHKDYPYWFTDFEPLAHFNPEDTTQITGYSVIKDSFT SDKNTSLVDDIRTEASANASSEDEAGVYSVNAIRLTGFVRRSLGGQRIIQDLQAKIDGNKESLFTFKPGDVKLEARQIME LGAKDAKVDAAAGAFVPFKLVLPLKTPIPVNFNK
Sequences:
>Translated_594_residues MGVFSKTSKDALILDRYATRLVVLDPSAEGLRLTKIGEAIADLVQELNVKGSVVNYSVSGQSVFIRFVKLPALDDTDVEQ LIRFEAQQHVPFPLDEVVWDYHLLPAKGLEREAILVAIKAEDLDSLNDEIVSHGLSTGKVDCALTSLYNAYVDSYPDEKE PVMLIDIGAKSTDLIYSEQGRFFTRSISAGGIFVTSAIAREFNIPFLEAERLKTTSGLVSMSNGQTEGLDPATANLATVI RTAMTRLASEIQRTTNHYRAQMSGSAPVKAYLCGGGASLPYTKEFLEDKLGIPISFFNPMHNVGVGSGVDVNTISREAFI LGGLIGTAIHSIGRASLNIDLEPTAVAKKRANQKKMPAIIAGAAIAVLGAAAYAVTGYMGEKKAEEILAGVQPTVTSIKS AQSALRQKEQELKKLDSTLASYQQLTLQRYGYADIIRHLLEQSEHKDYPYWFTDFEPLAHFNPEDTTQITGYSVIKDSFT SDKNTSLVDDIRTEASANASSEDEAGVYSVNAIRLTGFVRRSLGGQRIIQDLQAKIDGNKESLFTFKPGDVKLEARQIME LGAKDAKVDAAAGAFVPFKLVLPLKTPIPVNFNK >Mature_593_residues GVFSKTSKDALILDRYATRLVVLDPSAEGLRLTKIGEAIADLVQELNVKGSVVNYSVSGQSVFIRFVKLPALDDTDVEQL IRFEAQQHVPFPLDEVVWDYHLLPAKGLEREAILVAIKAEDLDSLNDEIVSHGLSTGKVDCALTSLYNAYVDSYPDEKEP VMLIDIGAKSTDLIYSEQGRFFTRSISAGGIFVTSAIAREFNIPFLEAERLKTTSGLVSMSNGQTEGLDPATANLATVIR TAMTRLASEIQRTTNHYRAQMSGSAPVKAYLCGGGASLPYTKEFLEDKLGIPISFFNPMHNVGVGSGVDVNTISREAFIL GGLIGTAIHSIGRASLNIDLEPTAVAKKRANQKKMPAIIAGAAIAVLGAAAYAVTGYMGEKKAEEILAGVQPTVTSIKSA QSALRQKEQELKKLDSTLASYQQLTLQRYGYADIIRHLLEQSEHKDYPYWFTDFEPLAHFNPEDTTQITGYSVIKDSFTS DKNTSLVDDIRTEASANASSEDEAGVYSVNAIRLTGFVRRSLGGQRIIQDLQAKIDGNKESLFTFKPGDVKLEARQIMEL GAKDAKVDAAAGAFVPFKLVLPLKTPIPVNFNK
Specific function: Unknown
COG id: COG4972
COG function: function code NU; Tfp pilus assembly protein, ATPase PilM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64629; Mature: 64498
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVFSKTSKDALILDRYATRLVVLDPSAEGLRLTKIGEAIADLVQELNVKGSVVNYSVSG CCCCCCCCCCCEEEECCCCEEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEECC QSVFIRFVKLPALDDTDVEQLIRFEAQQHVPFPLDEVVWDYHLLPAKGLEREAILVAIKA CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEEC EDLDSLNDEIVSHGLSTGKVDCALTSLYNAYVDSYPDEKEPVMLIDIGAKSTDLIYSEQG CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCC RFFTRSISAGGIFVTSAIAREFNIPFLEAERLKTTSGLVSMSNGQTEGLDPATANLATVI CEEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHH RTAMTRLASEIQRTTNHYRAQMSGSAPVKAYLCGGGASLPYTKEFLEDKLGIPISFFNPM HHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCH HNVGVGSGVDVNTISREAFILGGLIGTAIHSIGRASLNIDLEPTAVAKKRANQKKMPAII HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCHHH AGAAIAVLGAAAYAVTGYMGEKKAEEILAGVQPTVTSIKSAQSALRQKEQELKKLDSTLA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYQQLTLQRYGYADIIRHLLEQSEHKDYPYWFTDFEPLAHFNPEDTTQITGYSVIKDSFT HHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCEECCHHHHHHCCC SDKNTSLVDDIRTEASANASSEDEAGVYSVNAIRLTGFVRRSLGGQRIIQDLQAKIDGNK CCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCC ESLFTFKPGDVKLEARQIMELGAKDAKVDAAAGAFVPFKLVLPLKTPIPVNFNK CEEEEECCCCEEEHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure GVFSKTSKDALILDRYATRLVVLDPSAEGLRLTKIGEAIADLVQELNVKGSVVNYSVSG CCCCCCCCCCEEEECCCCEEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEECC QSVFIRFVKLPALDDTDVEQLIRFEAQQHVPFPLDEVVWDYHLLPAKGLEREAILVAIKA CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHEECCCCCCCCCEEEEEEEC EDLDSLNDEIVSHGLSTGKVDCALTSLYNAYVDSYPDEKEPVMLIDIGAKSTDLIYSEQG CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCC RFFTRSISAGGIFVTSAIAREFNIPFLEAERLKTTSGLVSMSNGQTEGLDPATANLATVI CEEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHH RTAMTRLASEIQRTTNHYRAQMSGSAPVKAYLCGGGASLPYTKEFLEDKLGIPISFFNPM HHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCH HNVGVGSGVDVNTISREAFILGGLIGTAIHSIGRASLNIDLEPTAVAKKRANQKKMPAII HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCHHH AGAAIAVLGAAAYAVTGYMGEKKAEEILAGVQPTVTSIKSAQSALRQKEQELKKLDSTLA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYQQLTLQRYGYADIIRHLLEQSEHKDYPYWFTDFEPLAHFNPEDTTQITGYSVIKDSFT HHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCEECCHHHHHHCCC SDKNTSLVDDIRTEASANASSEDEAGVYSVNAIRLTGFVRRSLGGQRIIQDLQAKIDGNK CCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCC ESLFTFKPGDVKLEARQIMELGAKDAKVDAAAGAFVPFKLVLPLKTPIPVNFNK CEEEEECCCCEEEHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA