Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is tadA [H]
Identifier: 187735588
GI number: 187735588
Start: 1304612
End: 1305157
Strand: Reverse
Name: tadA [H]
Synonym: Amuc_1093
Alternate gene names: 187735588
Gene position: 1305157-1304612 (Counterclockwise)
Preceding gene: 187735591
Following gene: 187735587
Centisome position: 48.99
GC content: 59.52
Gene sequence:
>546_bases ATGATAACCTCCGTAATGATGGAAATGCCCGGTTCGGACGAATGGTTCATGCGCCAAGCCATGAAAGAATCCAGAAAGGC CCTCGTGAAAGGGGAAGTGCCTGTTGGAGCCATTGTGGTGAAGGATGGCCGCGTGATCGGCCGGGGCTGGAACCAGGTGG AGACGCTCAAGGATGCTACGGCCCATGCGGAGATGATTGCCCTGACGGCGGCACAGGAGGCTTTGGGCGACTGGAGGCTG GAAGGCTGCACCCTGTATGTCACCAAGGAGCCGTGCCCCATGTGCGCAGGAGCTATCGTCCACTGCCGTCCGGACCGCGT CGTTTTCGGCTGCCCGGATGCAAAAACCGGGGCTGCGGGGGGCTGGATCAATCTGCTGGATTCCAATCCGCCCCTGAACC ATAAGTGCGAGGTGCGTCCCGGCGTACTGGGAGACGAGTGCCTGCTTCATCTCCAGGAGTTTTTCCGTGCGGCGCGTCTG GCGGCAAAAGAACGGAAAAAATTGTCTGCGCGTCTTTCTTCCCCTCCGGATGAAAACGGGGAATGA
Upstream 100 bases:
>100_bases GCATTCATCCCCACCCCTTTCCGCGGCATGGCGCACTTACCGTATAAAACACAATAAGAATCTTCCAGAAAGAGCTTGCC AGAACCGCGCCGCCCGGTCC
Downstream 100 bases:
>100_bases AGTCCGGAATAAAACACTTTGCATTTGCCAAAGCAGCAGAGTCACGGCAAGCTAGCGGGACTATGGAACGCCGGAACGAC AATGAGACTGCGGAAGGAAC
Product: CMP/dCMP deaminase zinc-binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MITSVMMEMPGSDEWFMRQAMKESRKALVKGEVPVGAIVVKDGRVIGRGWNQVETLKDATAHAEMIALTAAQEALGDWRL EGCTLYVTKEPCPMCAGAIVHCRPDRVVFGCPDAKTGAAGGWINLLDSNPPLNHKCEVRPGVLGDECLLHLQEFFRAARL AAKERKKLSARLSSPPDENGE
Sequences:
>Translated_181_residues MITSVMMEMPGSDEWFMRQAMKESRKALVKGEVPVGAIVVKDGRVIGRGWNQVETLKDATAHAEMIALTAAQEALGDWRL EGCTLYVTKEPCPMCAGAIVHCRPDRVVFGCPDAKTGAAGGWINLLDSNPPLNHKCEVRPGVLGDECLLHLQEFFRAARL AAKERKKLSARLSSPPDENGE >Mature_181_residues MITSVMMEMPGSDEWFMRQAMKESRKALVKGEVPVGAIVVKDGRVIGRGWNQVETLKDATAHAEMIALTAAQEALGDWRL EGCTLYVTKEPCPMCAGAIVHCRPDRVVFGCPDAKTGAAGGWINLLDSNPPLNHKCEVRPGVLGDECLLHLQEFFRAARL AAKERKKLSARLSSPPDENGE
Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]
COG id: COG0590
COG function: function code FJ; Cytosine/adenosine deaminases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]
Homologues:
Organism=Homo sapiens, GI124107608, Length=154, Percent_Identity=33.7662337662338, Blast_Score=89, Evalue=2e-18, Organism=Escherichia coli, GI145693172, Length=162, Percent_Identity=48.1481481481481, Blast_Score=152, Evalue=1e-38, Organism=Caenorhabditis elegans, GI17554608, Length=96, Percent_Identity=44.7916666666667, Blast_Score=90, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17541138, Length=113, Percent_Identity=37.1681415929204, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17555996, Length=104, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322425, Length=164, Percent_Identity=32.9268292682927, Blast_Score=72, Evalue=4e-14, Organism=Drosophila melanogaster, GI21355527, Length=158, Percent_Identity=32.2784810126582, Blast_Score=87, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR016193 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]
EC number: NA
Molecular weight: Translated: 19772; Mature: 19772
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITSVMMEMPGSDEWFMRQAMKESRKALVKGEVPVGAIVVKDGRVIGRGWNQVETLKDAT CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCHHHHHHHHH AHAEMIALTAAQEALGDWRLEGCTLYVTKEPCPMCAGAIVHCRPDRVVFGCPDAKTGAAG HHHHHHHHHHHHHHHCCEEECCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCCCCCC GWINLLDSNPPLNHKCEVRPGVLGDECLLHLQEFFRAARLAAKERKKLSARLSSPPDENG CEEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC E C >Mature Secondary Structure MITSVMMEMPGSDEWFMRQAMKESRKALVKGEVPVGAIVVKDGRVIGRGWNQVETLKDAT CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCHHHHHHHHH AHAEMIALTAAQEALGDWRLEGCTLYVTKEPCPMCAGAIVHCRPDRVVFGCPDAKTGAAG HHHHHHHHHHHHHHHCCEEECCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCCCCCC GWINLLDSNPPLNHKCEVRPGVLGDECLLHLQEFFRAARLAAKERKKLSARLSSPPDENG CEEEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]