Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735519
Identifier: 187735519
GI number: 187735519
Start: 1216516
End: 1217136
Strand: Reverse
Name: 187735519
Synonym: Amuc_1024
Alternate gene names: NA
Gene position: 1217136-1216516 (Counterclockwise)
Preceding gene: 187735520
Following gene: 187735518
Centisome position: 45.69
GC content: 58.13
Gene sequence:
>621_bases GTGCCGACTTGTCCGAAGTGTTTACATAATTTCCACCGCGGGGCGGAATCATTGTGCCCTCACTGCGGTTTTTCCCTGGA AAACCTGGACAAAAAATACGGCAAAGACGCCATACCCTACCGCCGCGTATGCGACAACGCCGGCGCTCTCCGACAACAGG ACCGCATAAAGCTGAATGCCCTGCTGGAGAAACTGGAACGCCGCATCCCCCCCGTTCTCCTGTCCGTCTATTTCCCCAAC ATCCTGGAGCCCTTTTCCCTTATTCCGCACAGTTTCTGGACGATGAACCACCTGACGGTGGATGAGGCCGGCTTCCCCAA CCATCAGGGACCGCTGGATCCCCAGTGGCTCCTGGTTCTGGTGCTGGACGTGCGCACGGACACGGCCTGCTTCATGTGGG GCTATGAACTGGACCCTTATGTAGAGCCGGACCTGATCAACAAATCCATCATGAAAGCCCGCATTCCCCTGCGGGAAAGC ATGCTGCTCCAGGCTGCGGGGTCCATCATGAAAAACGCCGTCCAGCTCGTAGCCAGGAAAGCGCGCTCCAAAGTCAGGCA TCCCATGCGCTACGGATTAACGCTTCCCACCCCCGAGGACCGGAAAGGAGGAGGCGCATGA
Upstream 100 bases:
>100_bases TTACCGTGTCACGAAAGAAAATCTGGAAGATTGAGACATACATGATTTCTTTCTGACAATTAGTCTTTTCGGCAACGAAC TTCGTGCTTAAACTTTCCTT
Downstream 100 bases:
>100_bases ACCCCTTTTTGTTCCCATGCCTGCTGGCGGCGTCCATTTTTCCGGCTCCCGCCCAGGAATTACCCGCCCTGAAATGGACC AACCGCGACCAGCAATCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MPTCPKCLHNFHRGAESLCPHCGFSLENLDKKYGKDAIPYRRVCDNAGALRQQDRIKLNALLEKLERRIPPVLLSVYFPN ILEPFSLIPHSFWTMNHLTVDEAGFPNHQGPLDPQWLLVLVLDVRTDTACFMWGYELDPYVEPDLINKSIMKARIPLRES MLLQAAGSIMKNAVQLVARKARSKVRHPMRYGLTLPTPEDRKGGGA
Sequences:
>Translated_206_residues MPTCPKCLHNFHRGAESLCPHCGFSLENLDKKYGKDAIPYRRVCDNAGALRQQDRIKLNALLEKLERRIPPVLLSVYFPN ILEPFSLIPHSFWTMNHLTVDEAGFPNHQGPLDPQWLLVLVLDVRTDTACFMWGYELDPYVEPDLINKSIMKARIPLRES MLLQAAGSIMKNAVQLVARKARSKVRHPMRYGLTLPTPEDRKGGGA >Mature_205_residues PTCPKCLHNFHRGAESLCPHCGFSLENLDKKYGKDAIPYRRVCDNAGALRQQDRIKLNALLEKLERRIPPVLLSVYFPNI LEPFSLIPHSFWTMNHLTVDEAGFPNHQGPLDPQWLLVLVLDVRTDTACFMWGYELDPYVEPDLINKSIMKARIPLRESM LLQAAGSIMKNAVQLVARKARSKVRHPMRYGLTLPTPEDRKGGGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23401; Mature: 23269
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTCPKCLHNFHRGAESLCPHCGFSLENLDKKYGKDAIPYRRVCDNAGALRQQDRIKLNA CCCCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHH LLEKLERRIPPVLLSVYFPNILEPFSLIPHSFWTMNHLTVDEAGFPNHQGPLDPQWLLVL HHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCCEEECCCCCCCCCCCCCHHEEHHH VLDVRTDTACFMWGYELDPYVEPDLINKSIMKARIPLRESMLLQAAGSIMKNAVQLVARK HHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH ARSKVRHPMRYGLTLPTPEDRKGGGA HHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure PTCPKCLHNFHRGAESLCPHCGFSLENLDKKYGKDAIPYRRVCDNAGALRQQDRIKLNA CCCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHH LLEKLERRIPPVLLSVYFPNILEPFSLIPHSFWTMNHLTVDEAGFPNHQGPLDPQWLLVL HHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCCEEECCCCCCCCCCCCCHHEEHHH VLDVRTDTACFMWGYELDPYVEPDLINKSIMKARIPLRESMLLQAAGSIMKNAVQLVARK HHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH ARSKVRHPMRYGLTLPTPEDRKGGGA HHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA