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The map label for this gene is ydiF [H]

Identifier: 187735493

GI number: 187735493

Start: 1188201

End: 1189811

Strand: Reverse

Name: ydiF [H]

Synonym: Amuc_0996

Alternate gene names: 187735493

Gene position: 1189811-1188201 (Counterclockwise)

Preceding gene: 187735495

Following gene: 187735492

Centisome position: 44.66

GC content: 55.68

Gene sequence:

>1611_bases
ATGCTGACGATCAAAAATCTCACAAAATCCCACGCCGGACGGACCTTGTTCAGGGAAACGGAAATGACCATTAACTGGGG
GGAACGGGTGGCTCTGGTTGGCCCCAACGGAGCAGGCAAATCCACCCTGTTCCGCATGATTCTGGGAGAAGACACGCCGG
ACGAAGGCTCCATCAGCATGGATGAATACGCCATCGTGGGCTATCTTCCCCAGGAAGCCAGCGAACCGAAGGATGAAACC
GTCCTGGAAATCGCCCTGGGCATCACGCCGGAAATGGAACAGGCCATCCACACCATCCGGACGGCGGAAAACGCCAACAA
AACGGATACGCCGGAATACGCGGAAGCCATTGACACCTTCAACGCCGCCAACGGTTACCAGCTGGAGCCCAAAGCCAAGA
AAATTCTCAAAGGGCTGGCCTTTCGGGAAAGCGACTTCCACCGCCCCGCCCGGGAAATGTCCGGCGGCTGGATTATGCGC
GCGTACCTGGCCAAGCTCCTTGTCCTGGAGCCGGACCTCCTGATGCTGGACGAACCTACTAACCACCTGGACCTCCTGTC
CCTGCTGTGGCTCCAGCGATACCTGAAAAACTACCCCGGAGCCATCCTGATGATTTCCCACGACCGGGATTTCATGGATG
AGCTGGTGGAAAGCGTGTACGACATCGACAACGAAGAACTGGTGGAATACCGCGGCAATTACTCGGACTTCCTCCAACAA
AAGGACGTGCGCTTCGAGCAGCTTCAGGCGGCCTACCGCAACCAGCAGAAGGAAATAGCGCACATTCAGGAATTTATTGA
CCGTTTCCGCTCCATCAATTCCAAAGCCGGGCAAGTCCAGAGCCGCATCAAGCAGCTGGAAAAGATGAAAATCATTCAAA
AACCGGTAGCCTGCAGGAAAGTATTTAAATTCAACTTCCCCCAGCCTCCGCGCAGCACCCAGAAAGTCATTGAGCTGGAA
AAAGTCTGCCAATCCTATGGCGACCGCAGGGTTTATGAAAATTTGGACCTGCTGGTGGAACGCGGGGAGCGCACTGTTCT
TGTAGGCCCGAACGGCGCGGGCAAATCCACTCTTCTCAAAATCCTGGCGGGCATCATCCCCATTGACTCCGGACAACGCA
CTCCCGGTACCACGACGCGCATCGGCTACTTCTCCCAGGCGCGAACGGAAAACCTGAACCCGGAAAATACCGTGCTGGAG
GAAATCATGAAATGCAGCGCTGAAATCCGGGAGGAAGAAGCGCGTTCCATCCTGGGTTCCTTCCTGTTCCGGAGGCTGGA
TGTGGAAAAACGCGTCAGCGTTCTTTCCGGCGGGGAAAAATCGCGGCTCAGCCTGGTCAAATTCCTGGTGGATCCGCCCA
ACCTCCTGCTGATGGACGAGCCGACCACCCACCTGGACCTTTTGTCCGTAGAAGCCCTGGTGCAGGCTCTGAAGCATTAT
GAAGGAACACTGGTCTTCATCTCCCACGATGTGCACTTCATCCGTTCCCTGGCACAAAAAACCCTGCATGTGAACCGGGG
GACCATCACCGCCTACGCAGGCGGATATGACTACTATCTGGAAAAGTCAGGCATTCTGGACGATGAAAAAGGCGGCATCA
CGGCGGAATAA

Upstream 100 bases:

>100_bases
ACGCGTAAAAATCCAGTAAAGCTTTCAAAAATGCCTGCCTCCGCCCTGACGGCTCTTGCCTTCCCCTTTCCATCCCGGTA
GAATACATCCTCTCTTCACC

Downstream 100 bases:

>100_bases
GGCTCTTTTTCAGTTTCCCCTTTTTCCTTGCCGTGGATTTCATCCTGCCTTAAAAGAACAGGATGAAGGCTTTTCTTGTT
CCTCTCTTATATTCTGCGCT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MLTIKNLTKSHAGRTLFRETEMTINWGERVALVGPNGAGKSTLFRMILGEDTPDEGSISMDEYAIVGYLPQEASEPKDET
VLEIALGITPEMEQAIHTIRTAENANKTDTPEYAEAIDTFNAANGYQLEPKAKKILKGLAFRESDFHRPAREMSGGWIMR
AYLAKLLVLEPDLLMLDEPTNHLDLLSLLWLQRYLKNYPGAILMISHDRDFMDELVESVYDIDNEELVEYRGNYSDFLQQ
KDVRFEQLQAAYRNQQKEIAHIQEFIDRFRSINSKAGQVQSRIKQLEKMKIIQKPVACRKVFKFNFPQPPRSTQKVIELE
KVCQSYGDRRVYENLDLLVERGERTVLVGPNGAGKSTLLKILAGIIPIDSGQRTPGTTTRIGYFSQARTENLNPENTVLE
EIMKCSAEIREEEARSILGSFLFRRLDVEKRVSVLSGGEKSRLSLVKFLVDPPNLLLMDEPTTHLDLLSVEALVQALKHY
EGTLVFISHDVHFIRSLAQKTLHVNRGTITAYAGGYDYYLEKSGILDDEKGGITAE

Sequences:

>Translated_536_residues
MLTIKNLTKSHAGRTLFRETEMTINWGERVALVGPNGAGKSTLFRMILGEDTPDEGSISMDEYAIVGYLPQEASEPKDET
VLEIALGITPEMEQAIHTIRTAENANKTDTPEYAEAIDTFNAANGYQLEPKAKKILKGLAFRESDFHRPAREMSGGWIMR
AYLAKLLVLEPDLLMLDEPTNHLDLLSLLWLQRYLKNYPGAILMISHDRDFMDELVESVYDIDNEELVEYRGNYSDFLQQ
KDVRFEQLQAAYRNQQKEIAHIQEFIDRFRSINSKAGQVQSRIKQLEKMKIIQKPVACRKVFKFNFPQPPRSTQKVIELE
KVCQSYGDRRVYENLDLLVERGERTVLVGPNGAGKSTLLKILAGIIPIDSGQRTPGTTTRIGYFSQARTENLNPENTVLE
EIMKCSAEIREEEARSILGSFLFRRLDVEKRVSVLSGGEKSRLSLVKFLVDPPNLLLMDEPTTHLDLLSVEALVQALKHY
EGTLVFISHDVHFIRSLAQKTLHVNRGTITAYAGGYDYYLEKSGILDDEKGGITAE
>Mature_536_residues
MLTIKNLTKSHAGRTLFRETEMTINWGERVALVGPNGAGKSTLFRMILGEDTPDEGSISMDEYAIVGYLPQEASEPKDET
VLEIALGITPEMEQAIHTIRTAENANKTDTPEYAEAIDTFNAANGYQLEPKAKKILKGLAFRESDFHRPAREMSGGWIMR
AYLAKLLVLEPDLLMLDEPTNHLDLLSLLWLQRYLKNYPGAILMISHDRDFMDELVESVYDIDNEELVEYRGNYSDFLQQ
KDVRFEQLQAAYRNQQKEIAHIQEFIDRFRSINSKAGQVQSRIKQLEKMKIIQKPVACRKVFKFNFPQPPRSTQKVIELE
KVCQSYGDRRVYENLDLLVERGERTVLVGPNGAGKSTLLKILAGIIPIDSGQRTPGTTTRIGYFSQARTENLNPENTVLE
EIMKCSAEIREEEARSILGSFLFRRLDVEKRVSVLSGGEKSRLSLVKFLVDPPNLLLMDEPTTHLDLLSVEALVQALKHY
EGTLVFISHDVHFIRSLAQKTLHVNRGTITAYAGGYDYYLEKSGILDDEKGGITAE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=526, Percent_Identity=34.7908745247148, Blast_Score=291, Evalue=7e-79,
Organism=Homo sapiens, GI27881506, Length=537, Percent_Identity=32.9608938547486, Blast_Score=258, Evalue=9e-69,
Organism=Homo sapiens, GI10947137, Length=537, Percent_Identity=32.9608938547486, Blast_Score=258, Evalue=9e-69,
Organism=Homo sapiens, GI69354671, Length=541, Percent_Identity=29.3900184842884, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI10947135, Length=541, Percent_Identity=29.3900184842884, Blast_Score=215, Evalue=7e-56,
Organism=Homo sapiens, GI171184400, Length=234, Percent_Identity=31.6239316239316, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1789751, Length=519, Percent_Identity=37.7649325626204, Blast_Score=355, Evalue=6e-99,
Organism=Escherichia coli, GI1787041, Length=529, Percent_Identity=34.593572778828, Blast_Score=325, Evalue=4e-90,
Organism=Escherichia coli, GI1787182, Length=531, Percent_Identity=32.9566854990584, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI2367384, Length=531, Percent_Identity=32.2033898305085, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI87081782, Length=526, Percent_Identity=24.9049429657795, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI48994943, Length=513, Percent_Identity=26.1208576998051, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1789891, Length=225, Percent_Identity=27.5555555555556, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=29.8165137614679, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788165, Length=194, Percent_Identity=30.4123711340206, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=28.5087719298246, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1786975, Length=505, Percent_Identity=26.9306930693069, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789593, Length=273, Percent_Identity=27.4725274725275, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1790467, Length=222, Percent_Identity=25.6756756756757, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=26.6375545851528, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=25.2293577981651, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787792, Length=203, Percent_Identity=29.064039408867, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=26.5217391304348, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786563, Length=191, Percent_Identity=27.2251308900524, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081834, Length=226, Percent_Identity=26.9911504424779, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787758, Length=190, Percent_Identity=30, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786345, Length=197, Percent_Identity=29.9492385786802, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=27.5700934579439, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786319, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788450, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786703, Length=211, Percent_Identity=30.8056872037915, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=226, Percent_Identity=28.3185840707965, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789586, Length=225, Percent_Identity=24.8888888888889, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1789864, Length=233, Percent_Identity=23.6051502145923, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=26.2672811059908, Blast_Score=62, Evalue=9e-11,
Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=31.5270935960591, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=519, Percent_Identity=34.2967244701349, Blast_Score=273, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17559834, Length=512, Percent_Identity=31.8359375, Blast_Score=260, Evalue=1e-69,
Organism=Caenorhabditis elegans, GI17555318, Length=522, Percent_Identity=31.8007662835249, Blast_Score=254, Evalue=7e-68,
Organism=Caenorhabditis elegans, GI193208177, Length=235, Percent_Identity=30.2127659574468, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=253, Percent_Identity=28.4584980237154, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=253, Percent_Identity=28.4584980237154, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=253, Percent_Identity=28.4584980237154, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=157, Percent_Identity=35.031847133758, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=250, Percent_Identity=29.2, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17542146, Length=171, Percent_Identity=26.9005847953216, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=529, Percent_Identity=32.3251417769376, Blast_Score=273, Evalue=4e-74,
Organism=Saccharomyces cerevisiae, GI6320874, Length=527, Percent_Identity=31.4990512333966, Blast_Score=261, Evalue=1e-70,
Organism=Saccharomyces cerevisiae, GI6324314, Length=377, Percent_Identity=26.2599469496021, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6323278, Length=379, Percent_Identity=25.065963060686, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6325030, Length=394, Percent_Identity=26.1421319796954, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6320296, Length=187, Percent_Identity=28.8770053475936, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24666836, Length=525, Percent_Identity=33.7142857142857, Blast_Score=290, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24642252, Length=528, Percent_Identity=32.7651515151515, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI18859989, Length=528, Percent_Identity=32.7651515151515, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI24641342, Length=531, Percent_Identity=31.2617702448211, Blast_Score=258, Evalue=8e-69,
Organism=Drosophila melanogaster, GI24581191, Length=152, Percent_Identity=36.1842105263158, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24581189, Length=152, Percent_Identity=36.1842105263158, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24581193, Length=152, Percent_Identity=36.1842105263158, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24581195, Length=152, Percent_Identity=36.1842105263158, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24662800, Length=179, Percent_Identity=30.1675977653631, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60750; Mature: 60750

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIKNLTKSHAGRTLFRETEMTINWGERVALVGPNGAGKSTLFRMILGEDTPDEGSISM
CCCCCHHHHHHCCCHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC
DEYAIVGYLPQEASEPKDETVLEIALGITPEMEQAIHTIRTAENANKTDTPEYAEAIDTF
CCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
NAANGYQLEPKAKKILKGLAFRESDFHRPAREMSGGWIMRAYLAKLLVLEPDLLMLDEPT
CCCCCCEECHHHHHHHHHHHHCCCHHCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCC
NHLDLLSLLWLQRYLKNYPGAILMISHDRDFMDELVESVYDIDNEELVEYRGNYSDFLQQ
CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHH
KDVRFEQLQAAYRNQQKEIAHIQEFIDRFRSINSKAGQVQSRIKQLEKMKIIQKPVACRK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
VFKFNFPQPPRSTQKVIELEKVCQSYGDRRVYENLDLLVERGERTVLVGPNGAGKSTLLK
HHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
ILAGIIPIDSGQRTPGTTTRIGYFSQARTENLNPENTVLEEIMKCSAEIREEEARSILGS
HHHHHCCCCCCCCCCCCCEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFRRLDVEKRVSVLSGGEKSRLSLVKFLVDPPNLLLMDEPTTHLDLLSVEALVQALKHY
HHHHHHCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC
EGTLVFISHDVHFIRSLAQKTLHVNRGTITAYAGGYDYYLEKSGILDDEKGGITAE
CCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTIKNLTKSHAGRTLFRETEMTINWGERVALVGPNGAGKSTLFRMILGEDTPDEGSISM
CCCCCHHHHHHCCCHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC
DEYAIVGYLPQEASEPKDETVLEIALGITPEMEQAIHTIRTAENANKTDTPEYAEAIDTF
CCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
NAANGYQLEPKAKKILKGLAFRESDFHRPAREMSGGWIMRAYLAKLLVLEPDLLMLDEPT
CCCCCCEECHHHHHHHHHHHHCCCHHCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCC
NHLDLLSLLWLQRYLKNYPGAILMISHDRDFMDELVESVYDIDNEELVEYRGNYSDFLQQ
CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHH
KDVRFEQLQAAYRNQQKEIAHIQEFIDRFRSINSKAGQVQSRIKQLEKMKIIQKPVACRK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
VFKFNFPQPPRSTQKVIELEKVCQSYGDRRVYENLDLLVERGERTVLVGPNGAGKSTLLK
HHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
ILAGIIPIDSGQRTPGTTTRIGYFSQARTENLNPENTVLEEIMKCSAEIREEEARSILGS
HHHHHCCCCCCCCCCCCCEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFRRLDVEKRVSVLSGGEKSRLSLVKFLVDPPNLLLMDEPTTHLDLLSVEALVQALKHY
HHHHHHCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC
EGTLVFISHDVHFIRSLAQKTLHVNRGTITAYAGGYDYYLEKSGILDDEKGGITAE
CCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]