Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735345
Identifier: 187735345
GI number: 187735345
Start: 1003008
End: 1004507
Strand: Reverse
Name: 187735345
Synonym: Amuc_0843
Alternate gene names: NA
Gene position: 1004507-1003008 (Counterclockwise)
Preceding gene: 187735346
Following gene: 187735343
Centisome position: 37.71
GC content: 60.0
Gene sequence:
>1500_bases ATGCCTGCCCGCTTCTTCCTTCCCGCACGCCTTCCGCTATGCGCGGGGTTGTTGTACCTGGCGCTACCCCTCCTCCTTTT TCTGCTGGGATGGGTGCATCCGGCTTTTTCCGTACCGCTTTGCGCCGCACTGGCATGCGGGCTGTACGCCTGCGCTCGGC ATCTTCCGGCACAAAGGTTTCCGTTAAGCGGGCGCGGATTGGCCGTGCTGGGCCTCCTCTCCTTCTTCTGCCTGATGCTG GTGCTGTTGTGCGGATTCACGGGCCACTGCCAGCAACACGCGGATTTTATTATCCGCAATGCCGTTTACGAACATCTTGC AGCAAATTCCTGGCCCCTCGTCACGGAGGACGGACATCATTTCATCTACTACCTGGGCCATTGGCTGCCTCCGGCGCTGG CGGCTTCTTTCTGCCCGGAATCATGGGCTCCCTGGCTGCTGGCCCTGTGGACCTTTCTTGGGCTGGAACTGGCGCTGCTG GCGGCAACCGTCCGCTGGGGAATCCGGAAGACGGCCCGCTGGGCGCTGATCCTCCTCTGCCTCGGCTCTCCGGCAGCGGT GCCGGACTGCCTGGGAATTCCCCTCTCCTCCCTGTTTGCGGAATACAATGCCCAGATGGTCCTGTTTATCGGCATGCCCG TCCAACTCTTCAACACATTCAATCACGCCGTTCCGGCGCTATTGTGCGCCGTATTCGTCCTGACGCGCTCCCTGCCTCCC TCCGGGTATTATCTCGCGGGAACGCTTCTGCTGCCGTCCTCCCCGCTGGGCGCCCTTCTGCTCCTTCCGTATATGGCGTA TGAAACCCTGTTCCGCCGCTCGTCGGCACGGAAACCTCTTTCCCGTCTCCGTTCCCTTCTGGGCCAGCCGGTTTTCTGGC TCGCGGCCCTGTGCACGGCCGTCATGGCCGTCTTTTATTCCCATTTGGACGGAGGAGGGCAATTTTCCTGCCTGTTTGAC GCAAAATATGCGGAAATCTACCATTACGGGCAGCAGCGGCTTCTGCTCCATCCCGGTTCCGCCAAATACGCCAGCTTCCT GCTGGCCCTGGCCCTGGGGATCCTGCTGCCGGGGGCGCTCCTCTTCCCAAAATGCCGGAAAAACCCGTTGTACTACATCA CGCTGGGCATGATGGCAGGCAGTCTCTTTTTCCGCACGGGCATCATGAACAATGAACTTCTCTTTAAAGCTCCGGCCGTC CTCTATCCCTTCCTTTCCCTGCTCTTTCTCCGGGCCCTCCGCCGGGGAGGCGTGAAATACCGGACCCTCCTGGTTCTTTA TCTCGTTTTTTCCGCCCTCCCGAACCTGCAATGCATCATGGAAAAAGCGGGAACATTCTCCACCCGGGCGAGCATCATGC GGAAACATTGGCAGACGGCCAACGGCACGCCTGACTGCCCGGACGCTCTCATCCGCCGCCAGTTCATGAAAAAGGACGGC CATCCCCTTCCCTCCTGGCTATTCAAAACCGGAACAAAGCCACAATCACGGCGGCAATAA
Upstream 100 bases:
>100_bases TTTCATCTCCGGAGGCAACTGCATCCTTTTCTTTGAAACAAAATATGCCATGCTGGCCCTTCGGAGTCCTCCCCTGCCGA TAAGTTTTCCGCTCTGCGTC
Downstream 100 bases:
>100_bases TCAATCCAGGCTGATGCCGAATATATCCGAAAGGGAACTGGAATCCACATCCAGTGCGTCTTCTCCTCCGGGAACGGGTT CCGGAGCTTTCGGAATCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MPARFFLPARLPLCAGLLYLALPLLLFLLGWVHPAFSVPLCAALACGLYACARHLPAQRFPLSGRGLAVLGLLSFFCLML VLLCGFTGHCQQHADFIIRNAVYEHLAANSWPLVTEDGHHFIYYLGHWLPPALAASFCPESWAPWLLALWTFLGLELALL AATVRWGIRKTARWALILLCLGSPAAVPDCLGIPLSSLFAEYNAQMVLFIGMPVQLFNTFNHAVPALLCAVFVLTRSLPP SGYYLAGTLLLPSSPLGALLLLPYMAYETLFRRSSARKPLSRLRSLLGQPVFWLAALCTAVMAVFYSHLDGGGQFSCLFD AKYAEIYHYGQQRLLLHPGSAKYASFLLALALGILLPGALLFPKCRKNPLYYITLGMMAGSLFFRTGIMNNELLFKAPAV LYPFLSLLFLRALRRGGVKYRTLLVLYLVFSALPNLQCIMEKAGTFSTRASIMRKHWQTANGTPDCPDALIRRQFMKKDG HPLPSWLFKTGTKPQSRRQ
Sequences:
>Translated_499_residues MPARFFLPARLPLCAGLLYLALPLLLFLLGWVHPAFSVPLCAALACGLYACARHLPAQRFPLSGRGLAVLGLLSFFCLML VLLCGFTGHCQQHADFIIRNAVYEHLAANSWPLVTEDGHHFIYYLGHWLPPALAASFCPESWAPWLLALWTFLGLELALL AATVRWGIRKTARWALILLCLGSPAAVPDCLGIPLSSLFAEYNAQMVLFIGMPVQLFNTFNHAVPALLCAVFVLTRSLPP SGYYLAGTLLLPSSPLGALLLLPYMAYETLFRRSSARKPLSRLRSLLGQPVFWLAALCTAVMAVFYSHLDGGGQFSCLFD AKYAEIYHYGQQRLLLHPGSAKYASFLLALALGILLPGALLFPKCRKNPLYYITLGMMAGSLFFRTGIMNNELLFKAPAV LYPFLSLLFLRALRRGGVKYRTLLVLYLVFSALPNLQCIMEKAGTFSTRASIMRKHWQTANGTPDCPDALIRRQFMKKDG HPLPSWLFKTGTKPQSRRQ >Mature_498_residues PARFFLPARLPLCAGLLYLALPLLLFLLGWVHPAFSVPLCAALACGLYACARHLPAQRFPLSGRGLAVLGLLSFFCLMLV LLCGFTGHCQQHADFIIRNAVYEHLAANSWPLVTEDGHHFIYYLGHWLPPALAASFCPESWAPWLLALWTFLGLELALLA ATVRWGIRKTARWALILLCLGSPAAVPDCLGIPLSSLFAEYNAQMVLFIGMPVQLFNTFNHAVPALLCAVFVLTRSLPPS GYYLAGTLLLPSSPLGALLLLPYMAYETLFRRSSARKPLSRLRSLLGQPVFWLAALCTAVMAVFYSHLDGGGQFSCLFDA KYAEIYHYGQQRLLLHPGSAKYASFLLALALGILLPGALLFPKCRKNPLYYITLGMMAGSLFFRTGIMNNELLFKAPAVL YPFLSLLFLRALRRGGVKYRTLLVLYLVFSALPNLQCIMEKAGTFSTRASIMRKHWQTANGTPDCPDALIRRQFMKKDGH PLPSWLFKTGTKPQSRRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55401; Mature: 55270
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARFFLPARLPLCAGLLYLALPLLLFLLGWVHPAFSVPLCAALACGLYACARHLPAQRF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC PLSGRGLAVLGLLSFFCLMLVLLCGFTGHCQQHADFIIRNAVYEHLAANSWPLVTEDGHH CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCE FIYYLGHWLPPALAASFCPESWAPWLLALWTFLGLELALLAATVRWGIRKTARWALILLC EEEEHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGSPAAVPDCLGIPLSSLFAEYNAQMVLFIGMPVQLFNTFNHAVPALLCAVFVLTRSLPP CCCCCCCCHHHCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC SGYYLAGTLLLPSSPLGALLLLPYMAYETLFRRSSARKPLSRLRSLLGQPVFWLAALCTA CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH VMAVFYSHLDGGGQFSCLFDAKYAEIYHYGQQRLLLHPGSAKYASFLLALALGILLPGAL HHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCHHH LFPKCRKNPLYYITLGMMAGSLFFRTGIMNNELLFKAPAVLYPFLSLLFLRALRRGGVKY HCHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH RTLLVLYLVFSALPNLQCIMEKAGTFSTRASIMRKHWQTANGTPDCPDALIRRQFMKKDG HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC HPLPSWLFKTGTKPQSRRQ CCCHHHHHHCCCCCCCCCC >Mature Secondary Structure PARFFLPARLPLCAGLLYLALPLLLFLLGWVHPAFSVPLCAALACGLYACARHLPAQRF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC PLSGRGLAVLGLLSFFCLMLVLLCGFTGHCQQHADFIIRNAVYEHLAANSWPLVTEDGHH CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCE FIYYLGHWLPPALAASFCPESWAPWLLALWTFLGLELALLAATVRWGIRKTARWALILLC EEEEHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGSPAAVPDCLGIPLSSLFAEYNAQMVLFIGMPVQLFNTFNHAVPALLCAVFVLTRSLPP CCCCCCCCHHHCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC SGYYLAGTLLLPSSPLGALLLLPYMAYETLFRRSSARKPLSRLRSLLGQPVFWLAALCTA CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH VMAVFYSHLDGGGQFSCLFDAKYAEIYHYGQQRLLLHPGSAKYASFLLALALGILLPGAL HHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCHHH LFPKCRKNPLYYITLGMMAGSLFFRTGIMNNELLFKAPAVLYPFLSLLFLRALRRGGVKY HCHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH RTLLVLYLVFSALPNLQCIMEKAGTFSTRASIMRKHWQTANGTPDCPDALIRRQFMKKDG HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC HPLPSWLFKTGTKPQSRRQ CCCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA