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The map label for this gene is rbcR [H]

Identifier: 186476014

GI number: 186476014

Start: 1405469

End: 1406383

Strand: Reverse

Name: rbcR [H]

Synonym: Bphy_1255

Alternate gene names: 186476014

Gene position: 1406383-1405469 (Counterclockwise)

Preceding gene: 186476023

Following gene: 186476013

Centisome position: 40.42

GC content: 67.54

Gene sequence:

>915_bases
ATGACCCCGGATCAGCTTATAACGTTCGCCGCCGTCGCGGAGCATCGCAACATCAGCCGCGCCGCACTGGCGCTGCATCT
GTCGCAGCCCGCCGTGTCCGGCCAGCTTCGTCAATTGCAGGATGAATTCGGCGAATCGCTTTACCTGCGCGACGGCCGCG
GCGTGCGGCTCACGCCTGCCGGTGAGCAACTCGCCAGCTATGCGTCGCGCCTGCGCGATACGTTTCGCCAGGCGTACGCG
TATCGCGACGCGCTGCGCGGCATGGAGCAAGGCACGCTGCGCATCGGCGCGAGTACGACGCCCGCAAGCTACCTGCTGCC
CTATCTGATGGCGGAGTTCCAGCGCCTTCACCCCGACGTCACCGTGCATACGGACGACGGCAATACGGCGGATATCATTG
GCGCGCTCGCGTCGTTCGATATTGCGCTGGTGGAGGGGCAGGTCGGCGGCGATCTGCCGCCCGATACGGTCGTGCATCCG
TGGCATGAGGACGAGATCGTCGCGATCATGCCGCGCTCGCATCCCTTGGCCTCGGCTGGCTTGCAGCACGTGACGCTCGC
TGACCTGGGCACGCATGCACTTGTTTTGCGCGAAGCAGGCTCGGGCGTGCGGCAGTTGATCGAGCGCGCGTTTGCGCGCG
CCGGCGTGCCGATGCGCGTCGCGCTCGCGATCGCGGGCGTGGAAGGCGTGAAGGAGGCAGTGCGCGCGGGAATGGGCGTC
GGTTTCGTATCGGCGATGTCGATGCGCCATGAGAACGAATCGCTGTGCCGCCTGCCGCTCGGCCCCGACCCGCTCACCCG
GCGCTTTTCCATACTCGTGCCGCACGCCAGCGCGCCGTCACGGCTCGTCGGACGCTTTCTGGAGCTGTGCCTCAACGGTG
ACGCGCCCCCTGTGGCCGGCGGGTCCGGCGCTTAA

Upstream 100 bases:

>100_bases
AGGCTGCTTGACTCGATGGCCTAATCCTAAATTAGATATATGGATATGAAAAATCGTGATTTAGAATGTCATATATCGGA
AAATCTGATATGTTATCCCC

Downstream 100 bases:

>100_bases
GGGATTACCACTATGGCGTCCCCGTAGATCGATGGGCAGTATTTGCTTCAAGCGCAGTCGCGCTTTTTTGATATCCGTCT
TTGGAACCGATTCCAAAGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGESLYLRDGRGVRLTPAGEQLASYASRLRDTFRQAYA
YRDALRGMEQGTLRIGASTTPASYLLPYLMAEFQRLHPDVTVHTDDGNTADIIGALASFDIALVEGQVGGDLPPDTVVHP
WHEDEIVAIMPRSHPLASAGLQHVTLADLGTHALVLREAGSGVRQLIERAFARAGVPMRVALAIAGVEGVKEAVRAGMGV
GFVSAMSMRHENESLCRLPLGPDPLTRRFSILVPHASAPSRLVGRFLELCLNGDAPPVAGGSGA

Sequences:

>Translated_304_residues
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGESLYLRDGRGVRLTPAGEQLASYASRLRDTFRQAYA
YRDALRGMEQGTLRIGASTTPASYLLPYLMAEFQRLHPDVTVHTDDGNTADIIGALASFDIALVEGQVGGDLPPDTVVHP
WHEDEIVAIMPRSHPLASAGLQHVTLADLGTHALVLREAGSGVRQLIERAFARAGVPMRVALAIAGVEGVKEAVRAGMGV
GFVSAMSMRHENESLCRLPLGPDPLTRRFSILVPHASAPSRLVGRFLELCLNGDAPPVAGGSGA
>Mature_303_residues
TPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGESLYLRDGRGVRLTPAGEQLASYASRLRDTFRQAYAY
RDALRGMEQGTLRIGASTTPASYLLPYLMAEFQRLHPDVTVHTDDGNTADIIGALASFDIALVEGQVGGDLPPDTVVHPW
HEDEIVAIMPRSHPLASAGLQHVTLADLGTHALVLREAGSGVRQLIERAFARAGVPMRVALAIAGVEGVKEAVRAGMGVG
FVSAMSMRHENESLCRLPLGPDPLTRRFSILVPHASAPSRLVGRFLELCLNGDAPPVAGGSGA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=299, Percent_Identity=31.1036789297659, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=28.3333333333333, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=29.0697674418605, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788296, Length=295, Percent_Identity=28.135593220339, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787879, Length=280, Percent_Identity=27.8571428571429, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790399, Length=287, Percent_Identity=27.8745644599303, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788748, Length=261, Percent_Identity=29.5019157088123, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790208, Length=269, Percent_Identity=28.6245353159851, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=23.7931034482759, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081904, Length=204, Percent_Identity=27.9411764705882, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788626, Length=237, Percent_Identity=27.8481012658228, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=275, Percent_Identity=25.0909090909091, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=132, Percent_Identity=30.3030303030303, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=249, Percent_Identity=24.4979919678715, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI48994962, Length=124, Percent_Identity=33.8709677419355, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788887, Length=180, Percent_Identity=31.1111111111111, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32488; Mature: 32356

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGESLYLRDGRGVRLTPA
CCHHHHHHHHHHHHHCCHHHHHHEEECCCCCHHHHHHHHHHHHCCEEEEECCCCEEECCC
GEQLASYASRLRDTFRQAYAYRDALRGMEQGTLRIGASTTPASYLLPYLMAEFQRLHPDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCE
TVHTDDGNTADIIGALASFDIALVEGQVGGDLPPDTVVHPWHEDEIVAIMPRSHPLASAG
EEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEECCCCCCCEEEEECCCCCHHHHC
LQHVTLADLGTHALVLREAGSGVRQLIERAFARAGVPMRVALAIAGVEGVKEAVRAGMGV
CCEEEHHHCCCCEEEEHHCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCH
GFVSAMSMRHENESLCRLPLGPDPLTRRFSILVPHASAPSRLVGRFLELCLNGDAPPVAG
HHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
GSGA
CCCC
>Mature Secondary Structure 
TPDQLITFAAVAEHRNISRAALALHLSQPAVSGQLRQLQDEFGESLYLRDGRGVRLTPA
CHHHHHHHHHHHHHCCHHHHHHEEECCCCCHHHHHHHHHHHHCCEEEEECCCCEEECCC
GEQLASYASRLRDTFRQAYAYRDALRGMEQGTLRIGASTTPASYLLPYLMAEFQRLHPDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCE
TVHTDDGNTADIIGALASFDIALVEGQVGGDLPPDTVVHPWHEDEIVAIMPRSHPLASAG
EEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEECCCCCCCEEEEECCCCCHHHHC
LQHVTLADLGTHALVLREAGSGVRQLIERAFARAGVPMRVALAIAGVEGVKEAVRAGMGV
CCEEEHHHCCCCEEEEHHCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCH
GFVSAMSMRHENESLCRLPLGPDPLTRRFSILVPHASAPSRLVGRFLELCLNGDAPPVAG
HHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
GSGA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]