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The map label for this gene is apl [H]

Identifier: 183221241

GI number: 183221241

Start: 1948367

End: 1949008

Strand: Reverse

Name: apl [H]

Synonym: LEPBI_I1856

Alternate gene names: 183221241

Gene position: 1949008-1948367 (Counterclockwise)

Preceding gene: 183221247

Following gene: 183221240

Centisome position: 54.14

GC content: 38.47

Gene sequence:

>642_bases
GTGTTGGATTCCTTCCCATTGGATGCCATGATCAATGAAATTCTCGGGTTACCACCATTGGTACTTTGGGTTTTTTTCTG
TTTTTCGAATTTTTTGGAGAATATTTTCCCACCTTGGCCAGGGGACACCATCACTGTTTTTTCTGGTTTTATCTCTTCCA
CACAAAACGCACCGATCTCTTTTTCTTCTGTTGTACTCGCTACTTTTTTTGGAAATCTTCTCGGTGCCTTGGTGATGTAT
TATTTTGGGGAGCGGTTTTTGTTGTTTTTGAAACGAACCAAAATTCCTTTTCTTTCGTCTCTTTACCACGAAGAAAACTT
ACGGAAGACCTTGGTATGGTTTCGAAAGTATGAGATTGTCGTGGTTTTGGTCTCTCGGTTTTCTGCTGGGATTCGATTTT
TTGTTTCGATTGTGGCCGGGATGTCCAAAATGAACATCATTAAATTTGTAGTTCTTTATTCCATTGCCATTTCTATGTGG
TGTGGAATGCTTCTATTTGGCGGTTCCTTCCTTGGGACCAACTGGAACCAAATCATTGTTATACTATCTTACTACAATCA
AACGATTGGTCTCATTCTACTTTTTCTGATTTTATACTTCCTTTACCAAATGTTGAAGAAAAGAAATACGAAGTTGACAT
GA

Upstream 100 bases:

>100_bases
TCGAAGCATTAGGGAAAGCAAATGTCCTAGTATTGATTCCTTCCATTCATTTTTTAAAATCTTTGTTGCCTAACCGGAGA
ATGGTTTTTAGCATCTCGTT

Downstream 100 bases:

>100_bases
TTTAAAATTCTGTTAGGGTTTCCAACCATGGATTCATGGGGCAAGATTTCTTTTGATTTTTATACGTTTGGTTCGCTTGT
TGGAGTCATTTTTACTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MLDSFPLDAMINEILGLPPLVLWVFFCFSNFLENIFPPWPGDTITVFSGFISSTQNAPISFSSVVLATFFGNLLGALVMY
YFGERFLLFLKRTKIPFLSSLYHEENLRKTLVWFRKYEIVVVLVSRFSAGIRFFVSIVAGMSKMNIIKFVVLYSIAISMW
CGMLLFGGSFLGTNWNQIIVILSYYNQTIGLILLFLILYFLYQMLKKRNTKLT

Sequences:

>Translated_213_residues
MLDSFPLDAMINEILGLPPLVLWVFFCFSNFLENIFPPWPGDTITVFSGFISSTQNAPISFSSVVLATFFGNLLGALVMY
YFGERFLLFLKRTKIPFLSSLYHEENLRKTLVWFRKYEIVVVLVSRFSAGIRFFVSIVAGMSKMNIIKFVVLYSIAISMW
CGMLLFGGSFLGTNWNQIIVILSYYNQTIGLILLFLILYFLYQMLKKRNTKLT
>Mature_213_residues
MLDSFPLDAMINEILGLPPLVLWVFFCFSNFLENIFPPWPGDTITVFSGFISSTQNAPISFSSVVLATFFGNLLGALVMY
YFGERFLLFLKRTKIPFLSSLYHEENLRKTLVWFRKYEIVVVLVSRFSAGIRFFVSIVAGMSKMNIIKFVVLYSIAISMW
CGMLLFGGSFLGTNWNQIIVILSYYNQTIGLILLFLILYFLYQMLKKRNTKLT

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24543; Mature: 24543

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSFPLDAMINEILGLPPLVLWVFFCFSNFLENIFPPWPGDTITVFSGFISSTQNAPIS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCH
FSSVVLATFFGNLLGALVMYYFGERFLLFLKRTKIPFLSSLYHEENLRKTLVWFRKYEIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVLVSRFSAGIRFFVSIVAGMSKMNIIKFVVLYSIAISMWCGMLLFGGSFLGTNWNQIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHH
ILSYYNQTIGLILLFLILYFLYQMLKKRNTKLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLDSFPLDAMINEILGLPPLVLWVFFCFSNFLENIFPPWPGDTITVFSGFISSTQNAPIS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCH
FSSVVLATFFGNLLGALVMYYFGERFLLFLKRTKIPFLSSLYHEENLRKTLVWFRKYEIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVLVSRFSAGIRFFVSIVAGMSKMNIIKFVVLYSIAISMWCGMLLFGGSFLGTNWNQIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHH
ILSYYNQTIGLILLFLILYFLYQMLKKRNTKLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]