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The map label for this gene is secF [H]

Identifier: 183220791

GI number: 183220791

Start: 1461619

End: 1462557

Strand: Direct

Name: secF [H]

Synonym: LEPBI_I1402

Alternate gene names: 183220791

Gene position: 1461619-1462557 (Clockwise)

Preceding gene: 183220790

Following gene: 183220792

Centisome position: 40.6

GC content: 38.98

Gene sequence:

>939_bases
ATGTATAATATCAACTTCACTAAGTATAAATACTTCACGTTAAGCATTTCCTTTTTGGTAATTGTTTTTGGATTTGTTGT
CACATTTTCCAAGTATGGTGGGTTTGCTCACTCATTGGATTTTAACGGTGGCCTTCGAACCGTAGTAGAACTTCCGAAAG
ACAAATCACGCACTGACTTAGAATCTTATTTCCAATCGAAAAAAATTGAAGCAGTTGTCATCTTACTAGAAAAAGAGAAA
AACATTTTTCAATTGGATGTGGGGCTTGGTTCTCTTTCCACGATAGAAACACTCTACAAAGAAATCCCAGAAGAAAAAAG
GGAAACTTCTACATCTGCCATTGACAGGTTTGTACAATTGCTTCGTTTTGAATTCAGTCTTCCAAAAGAAAAAGTCCTTT
CGGCAGACCAAGTGGGAGCTGTTGTTGGTGGGGAACTCACAGAAGTAGGGATCACACTTCTACTCACAACACTTGGAATC
ATTCTTTTGTATCTAAGCATTCGGTCTCAGTTTAAATTTGCGCTCGCATCCGCTATCGCACTCGTGCATGATATTTTGAT
GACACTTGCATTGATCGGATTTTTACAAATCAAACCAAGTGTTCCCATCATTGCCGCTCTTCTTACTTTGCTTGGGTATT
CGATTAATGATAAAATTGTGGTATTTGATCGGATTCGGGAAAATGCTCATGGAAAAGACAACCTTGCCCTTTCCAATATC
ATCAATGTTTCGATTTCACAAACTTTGGGAAGGACCATCAATACTTCCTTCACTACCATGATTTCTGTTGTGGCAATCAT
TGTGGGTGGAGCGGCGGAATTGTATGACTTTGCGTTCATTTTGCTCTTTGGTGTCATTGTCGGAACCTATTCTTCCATTT
ACATTGCAGCACCTATTTCTGAGATCTACGACCGACTCAGGAAAAAAAGATTCGCATAA

Upstream 100 bases:

>100_bases
TTATTTTTGTCTCGTTTGTTTATGGAACTGACTGTAAACCGATTCGGAGTCCACCATTTGAACCTAAGACCTTTTTTCTT
TGGTAAAAAAGAGGGTAAAC

Downstream 100 bases:

>100_bases
CGAAAATTTGATGGATGTAGAGAAAAGGAAGGAACTTTATTCTCTGCATTCCCTTCTTGGGTTTCTTGCCATGGGTAAAA
CTGGCGGGAACCCACCTGTT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MYNINFTKYKYFTLSISFLVIVFGFVVTFSKYGGFAHSLDFNGGLRTVVELPKDKSRTDLESYFQSKKIEAVVILLEKEK
NIFQLDVGLGSLSTIETLYKEIPEEKRETSTSAIDRFVQLLRFEFSLPKEKVLSADQVGAVVGGELTEVGITLLLTTLGI
ILLYLSIRSQFKFALASAIALVHDILMTLALIGFLQIKPSVPIIAALLTLLGYSINDKIVVFDRIRENAHGKDNLALSNI
INVSISQTLGRTINTSFTTMISVVAIIVGGAAELYDFAFILLFGVIVGTYSSIYIAAPISEIYDRLRKKRFA

Sequences:

>Translated_312_residues
MYNINFTKYKYFTLSISFLVIVFGFVVTFSKYGGFAHSLDFNGGLRTVVELPKDKSRTDLESYFQSKKIEAVVILLEKEK
NIFQLDVGLGSLSTIETLYKEIPEEKRETSTSAIDRFVQLLRFEFSLPKEKVLSADQVGAVVGGELTEVGITLLLTTLGI
ILLYLSIRSQFKFALASAIALVHDILMTLALIGFLQIKPSVPIIAALLTLLGYSINDKIVVFDRIRENAHGKDNLALSNI
INVSISQTLGRTINTSFTTMISVVAIIVGGAAELYDFAFILLFGVIVGTYSSIYIAAPISEIYDRLRKKRFA
>Mature_312_residues
MYNINFTKYKYFTLSISFLVIVFGFVVTFSKYGGFAHSLDFNGGLRTVVELPKDKSRTDLESYFQSKKIEAVVILLEKEK
NIFQLDVGLGSLSTIETLYKEIPEEKRETSTSAIDRFVQLLRFEFSLPKEKVLSADQVGAVVGGELTEVGITLLLTTLGI
ILLYLSIRSQFKFALASAIALVHDILMTLALIGFLQIKPSVPIIAALLTLLGYSINDKIVVFDRIRENAHGKDNLALSNI
INVSISQTLGRTINTSFTTMISVVAIIVGGAAELYDFAFILLFGVIVGTYSSIYIAAPISEIYDRLRKKRFA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=299, Percent_Identity=30.7692307692308, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34625; Mature: 34625

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNINFTKYKYFTLSISFLVIVFGFVVTFSKYGGFAHSLDFNGGLRTVVELPKDKSRTDL
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHCCCCCCCHHH
ESYFQSKKIEAVVILLEKEKNIFQLDVGLGSLSTIETLYKEIPEEKRETSTSAIDRFVQL
HHHHHHCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LRFEFSLPKEKVLSADQVGAVVGGELTEVGITLLLTTLGIILLYLSIRSQFKFALASAIA
HHHHHCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVHDILMTLALIGFLQIKPSVPIIAALLTLLGYSINDKIVVFDRIRENAHGKDNLALSNI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCHHHHHH
INVSISQTLGRTINTSFTTMISVVAIIVGGAAELYDFAFILLFGVIVGTYSSIYIAAPIS
HHHHHHHHHCCHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHH
EIYDRLRKKRFA
HHHHHHHHHCCC
>Mature Secondary Structure
MYNINFTKYKYFTLSISFLVIVFGFVVTFSKYGGFAHSLDFNGGLRTVVELPKDKSRTDL
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHCCCCCCCHHH
ESYFQSKKIEAVVILLEKEKNIFQLDVGLGSLSTIETLYKEIPEEKRETSTSAIDRFVQL
HHHHHHCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LRFEFSLPKEKVLSADQVGAVVGGELTEVGITLLLTTLGIILLYLSIRSQFKFALASAIA
HHHHHCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVHDILMTLALIGFLQIKPSVPIIAALLTLLGYSINDKIVVFDRIRENAHGKDNLALSNI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCHHHHHH
INVSISQTLGRTINTSFTTMISVVAIIVGGAAELYDFAFILLFGVIVGTYSSIYIAAPIS
HHHHHHHHHCCHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHH
EIYDRLRKKRFA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]