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The map label for this gene is secD [H]

Identifier: 183220790

GI number: 183220790

Start: 1459692

End: 1461626

Strand: Direct

Name: secD [H]

Synonym: LEPBI_I1401

Alternate gene names: 183220790

Gene position: 1459692-1461626 (Clockwise)

Preceding gene: 183220789

Following gene: 183220791

Centisome position: 40.55

GC content: 40.78

Gene sequence:

>1935_bases
TTGCAATCGTATCGACTCTTACTTCTACCATTTTTCATATTAGTGGTATCCTTTACCATTTTGTATCCTAATTTTGCCGA
CCGAACTTTAAAAGTAGTCGTGAGAGAGGATGTATATTCCCTACCCGAAGCGGAACAAAAAACAGTCGTAGGTGGACTCT
TTGAACGTTGGGAAAACGATTATGGAAAAAGTTCAGGTTGGACCATCGAACCAAAAGGTACGCTCCCTCCGAAAGAAAAT
CCATTTTATACTGTGAAGGGAAGGTTCATCACTTCTGCTAAAATCAACCAAATTTCTCAAGAGAACCAAAGTTTGGTGAA
TGAAGGCAAAAACAAATTGGAGCCAACTTGGATCGAAGATATGATCCGTGGTGGTAAGTCCTTGTCCATCAAACTGGGTC
TCGACCTACAAGGTGGAATGCGAGTGGTGCTCAAAGGTGATTTCGAAGATTACACTGCCAAACTCCGAGACCTGTATGCA
AAAGAAATCGCAGAACTCAATTTAACTTTGAACAATCCATTGGCAAAACCAGAAGAGAAGGAAAAAGCACAAAATCGTCT
TTCGGAAATCGAATCCAGTTTTGACCTTTCACCAATGCGTAAGATTGTTGAGTTAGAAAAGGCAAAGATGATTATCGACA
ATCGTCTTACGACTCAAAACCTTACAGAGCCTCAGGTGAGAATCCAAAAGGAACAAGATGCTATCGAAGTCTCGCTCCCA
GGTGTTTCCAACTCAGCGGCGATCTTAGAAATTTTACAAAATACAGAAACTGTCGAATACCGATTAGAAGAACCAAATTC
TTTTACTTATAAAAAAATCATAAGCGATAGTGAAAGTCGACTGATGGACCTTGGGCAAAGGGAAAAAACAGATATATTCC
TCTTCCAAGAACTTGTGAAAAACAAAGCGGGGAAAAAAGCCCAAGATGAATTTTTAGCTGGGCTCGAAAAAAAATACAAT
ATTCCCAAAGACTACAAAGTGTATGCAATGTGGGCCCGTGGTAATTCTGCCAAGTCAACCTTACTCCCTAGGAGTTTTGT
TGTCCTCGAAAGAAAAATCGCTCTTTCAGGGAATGATATGACCAATGCACAACCATCTTATAATTCCAACTCATATGGAT
GGATGGTTAGTTTTACTTTAACTCCCAATGGTGCTGAGAAATTTTTTGATTTAACCTCAGAAAATCGAGGTCGTAACCTA
GCCATTGTTTGGGGTGACAAAGTGATCTCCAATCCTGTGATCAATGACCCAATCGCTGGTGGTCGTGCCGAAATTTCAGG
AAGTTTTTCTGAACAAGAAGCCATTCGTTTGGCAAACGTAATCTCAGAAGGTGCACTTCCCATTCCACTTTCGGTGCTCG
AAATGCGTTTCATTGGACCTACTCTTGGGATTGAATCCATTGAAGTCGGTGTAAAGGCAGTGGCAATTGGATTTTTTCTC
GTGATGGTTTATATGATCCTATACTACCGGTTAGGTGGTTTGATTGCAGACTTATCCTTACTTGTAAACATCATCATTTT
GGCAGCACTTCTCACTTTGATGGATTTTACTCTGACCTTACCAGGGATTGCGGGGATTATCTTAACTGCTGGTATGGCAG
TTGATGCGAACGTCATCATTTACGAAAGGATCAGAGAGGAAATTGAAGAAGGGCGCGCTTTGTCCATTGCTGTCACGAGA
GGTTTTGAAAATGCATTCTGGACAATTATGGATGCAAACGTCACAACACTCATCGCAGGGATTTTAATGATCCGACTTGG
AAACGGACCAATCAAAGGTTTTGCGATCACTCTTTGTTGGGGGATTGTGACGACTCTTTTCACTTCCTTATTTTTGTCTC
GTTTGTTTATGGAACTGACTGTAAACCGATTCGGAGTCCACCATTTGAACCTAAGACCTTTTTTCTTTGGTAAAAAAGAG
GGTAAACATGTATAA

Upstream 100 bases:

>100_bases
CGGTATCATCATCCTCTTTGCTTTTTACAGACTTAGATCCGCACGTCCTGGCTCTAGCAGCCGTTCTTATAGAAGATAAA
ATTTTTAGGAGCAAACCAAC

Downstream 100 bases:

>100_bases
TATCAACTTCACTAAGTATAAATACTTCACGTTAAGCATTTCCTTTTTGGTAATTGTTTTTGGATTTGTTGTCACATTTT
CCAAGTATGGTGGGTTTGCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 644; Mature: 644

Protein sequence:

>644_residues
MQSYRLLLLPFFILVVSFTILYPNFADRTLKVVVREDVYSLPEAEQKTVVGGLFERWENDYGKSSGWTIEPKGTLPPKEN
PFYTVKGRFITSAKINQISQENQSLVNEGKNKLEPTWIEDMIRGGKSLSIKLGLDLQGGMRVVLKGDFEDYTAKLRDLYA
KEIAELNLTLNNPLAKPEEKEKAQNRLSEIESSFDLSPMRKIVELEKAKMIIDNRLTTQNLTEPQVRIQKEQDAIEVSLP
GVSNSAAILEILQNTETVEYRLEEPNSFTYKKIISDSESRLMDLGQREKTDIFLFQELVKNKAGKKAQDEFLAGLEKKYN
IPKDYKVYAMWARGNSAKSTLLPRSFVVLERKIALSGNDMTNAQPSYNSNSYGWMVSFTLTPNGAEKFFDLTSENRGRNL
AIVWGDKVISNPVINDPIAGGRAEISGSFSEQEAIRLANVISEGALPIPLSVLEMRFIGPTLGIESIEVGVKAVAIGFFL
VMVYMILYYRLGGLIADLSLLVNIIILAALLTLMDFTLTLPGIAGIILTAGMAVDANVIIYERIREEIEEGRALSIAVTR
GFENAFWTIMDANVTTLIAGILMIRLGNGPIKGFAITLCWGIVTTLFTSLFLSRLFMELTVNRFGVHHLNLRPFFFGKKE
GKHV

Sequences:

>Translated_644_residues
MQSYRLLLLPFFILVVSFTILYPNFADRTLKVVVREDVYSLPEAEQKTVVGGLFERWENDYGKSSGWTIEPKGTLPPKEN
PFYTVKGRFITSAKINQISQENQSLVNEGKNKLEPTWIEDMIRGGKSLSIKLGLDLQGGMRVVLKGDFEDYTAKLRDLYA
KEIAELNLTLNNPLAKPEEKEKAQNRLSEIESSFDLSPMRKIVELEKAKMIIDNRLTTQNLTEPQVRIQKEQDAIEVSLP
GVSNSAAILEILQNTETVEYRLEEPNSFTYKKIISDSESRLMDLGQREKTDIFLFQELVKNKAGKKAQDEFLAGLEKKYN
IPKDYKVYAMWARGNSAKSTLLPRSFVVLERKIALSGNDMTNAQPSYNSNSYGWMVSFTLTPNGAEKFFDLTSENRGRNL
AIVWGDKVISNPVINDPIAGGRAEISGSFSEQEAIRLANVISEGALPIPLSVLEMRFIGPTLGIESIEVGVKAVAIGFFL
VMVYMILYYRLGGLIADLSLLVNIIILAALLTLMDFTLTLPGIAGIILTAGMAVDANVIIYERIREEIEEGRALSIAVTR
GFENAFWTIMDANVTTLIAGILMIRLGNGPIKGFAITLCWGIVTTLFTSLFLSRLFMELTVNRFGVHHLNLRPFFFGKKE
GKHV
>Mature_644_residues
MQSYRLLLLPFFILVVSFTILYPNFADRTLKVVVREDVYSLPEAEQKTVVGGLFERWENDYGKSSGWTIEPKGTLPPKEN
PFYTVKGRFITSAKINQISQENQSLVNEGKNKLEPTWIEDMIRGGKSLSIKLGLDLQGGMRVVLKGDFEDYTAKLRDLYA
KEIAELNLTLNNPLAKPEEKEKAQNRLSEIESSFDLSPMRKIVELEKAKMIIDNRLTTQNLTEPQVRIQKEQDAIEVSLP
GVSNSAAILEILQNTETVEYRLEEPNSFTYKKIISDSESRLMDLGQREKTDIFLFQELVKNKAGKKAQDEFLAGLEKKYN
IPKDYKVYAMWARGNSAKSTLLPRSFVVLERKIALSGNDMTNAQPSYNSNSYGWMVSFTLTPNGAEKFFDLTSENRGRNL
AIVWGDKVISNPVINDPIAGGRAEISGSFSEQEAIRLANVISEGALPIPLSVLEMRFIGPTLGIESIEVGVKAVAIGFFL
VMVYMILYYRLGGLIADLSLLVNIIILAALLTLMDFTLTLPGIAGIILTAGMAVDANVIIYERIREEIEEGRALSIAVTR
GFENAFWTIMDANVTTLIAGILMIRLGNGPIKGFAITLCWGIVTTLFTSLFLSRLFMELTVNRFGVHHLNLRPFFFGKKE
GKHV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=297, Percent_Identity=37.037037037037, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 72149; Mature: 72149

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSYRLLLLPFFILVVSFTILYPNFADRTLKVVVREDVYSLPEAEQKTVVGGLFERWEND
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHHHCCCCCHHHHHHHHHHHHHHHH
YGKSSGWTIEPKGTLPPKENPFYTVKGRFITSAKINQISQENQSLVNEGKNKLEPTWIED
CCCCCCCEECCCCCCCCCCCCEEEEECEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
MIRGGKSLSIKLGLDLQGGMRVVLKGDFEDYTAKLRDLYAKEIAELNLTLNNPLAKPEEK
HHCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHH
EKAQNRLSEIESSFDLSPMRKIVELEKAKMIIDNRLTTQNLTEPQVRIQKEQDAIEVSLP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCEEEEECC
GVSNSAAILEILQNTETVEYRLEEPNSFTYKKIISDSESRLMDLGQREKTDIFLFQELVK
CCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHH
NKAGKKAQDEFLAGLEKKYNIPKDYKVYAMWARGNSAKSTLLPRSFVVLERKIALSGNDM
CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCHHHHEEEEEEEECCCCC
TNAQPSYNSNSYGWMVSFTLTPNGAEKFFDLTSENRGRNLAIVWGDKVISNPVINDPIAG
CCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCEEEEEECCHHHCCCCCCCCCCC
GRAEISGSFSEQEAIRLANVISEGALPIPLSVLEMRFIGPTLGIESIEVGVKAVAIGFFL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
VMVYMILYYRLGGLIADLSLLVNIIILAALLTLMDFTLTLPGIAGIILTAGMAVDANVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHH
YERIREEIEEGRALSIAVTRGFENAFWTIMDANVTTLIAGILMIRLGNGPIKGFAITLCW
HHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHEECCCCCCHHHHHHHH
GIVTTLFTSLFLSRLFMELTVNRFGVHHLNLRPFFFGKKEGKHV
HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCCCC
>Mature Secondary Structure
MQSYRLLLLPFFILVVSFTILYPNFADRTLKVVVREDVYSLPEAEQKTVVGGLFERWEND
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHHHCCCCCHHHHHHHHHHHHHHHH
YGKSSGWTIEPKGTLPPKENPFYTVKGRFITSAKINQISQENQSLVNEGKNKLEPTWIED
CCCCCCCEECCCCCCCCCCCCEEEEECEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
MIRGGKSLSIKLGLDLQGGMRVVLKGDFEDYTAKLRDLYAKEIAELNLTLNNPLAKPEEK
HHCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHH
EKAQNRLSEIESSFDLSPMRKIVELEKAKMIIDNRLTTQNLTEPQVRIQKEQDAIEVSLP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCEEEEECC
GVSNSAAILEILQNTETVEYRLEEPNSFTYKKIISDSESRLMDLGQREKTDIFLFQELVK
CCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHH
NKAGKKAQDEFLAGLEKKYNIPKDYKVYAMWARGNSAKSTLLPRSFVVLERKIALSGNDM
CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCHHHHEEEEEEEECCCCC
TNAQPSYNSNSYGWMVSFTLTPNGAEKFFDLTSENRGRNLAIVWGDKVISNPVINDPIAG
CCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCEEEEEECCHHHCCCCCCCCCCC
GRAEISGSFSEQEAIRLANVISEGALPIPLSVLEMRFIGPTLGIESIEVGVKAVAIGFFL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
VMVYMILYYRLGGLIADLSLLVNIIILAALLTLMDFTLTLPGIAGIILTAGMAVDANVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHH
YERIREEIEEGRALSIAVTRGFENAFWTIMDANVTTLIAGILMIRLGNGPIKGFAITLCW
HHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHEECCCCCCHHHHHHHH
GIVTTLFTSLFLSRLFMELTVNRFGVHHLNLRPFFFGKKEGKHV
HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA