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The map label for this gene is rhaS [C]

Identifier: 183220167

GI number: 183220167

Start: 772714

End: 773832

Strand: Reverse

Name: rhaS [C]

Synonym: LEPBI_I0755

Alternate gene names: 183220167

Gene position: 773832-772714 (Counterclockwise)

Preceding gene: 183220175

Following gene: 183220166

Centisome position: 21.5

GC content: 37.98

Gene sequence:

>1119_bases
TTGGATGCATTCTTTAGAACCTTCTATTTTATGGGAAACGTGATGATCCACCTAATTGCTTTTTCAGCAGGTTTGGCATT
TTTGTTTGCCATCGGAGAATTCCTTAGGACCAATTCGAGCCGGCAAACGAAGGTGCAGGGATTATTATTTCTATTTGCTG
CCTTTTTCCAAACTCATACCTATCTTACAGCCACTGAACTCTATCAAGTTTACCCTCATTTTTATTTGGTACATTTACCA
TTTACGGCATGCATCGGATCTCTACTCAAACAGTATTTCTCCGAACTTTGGAATGATAGCCCAAACAAAAATGAGTTTTC
CTACTTAGAATTGGCCCCAGCTTTTCTTGTCACATTCTTGATGACTCCATTTTATCTCTCCTCGGCGGAAGAAAAAATTA
TGATTCATCAATCCTATTTAAAAATCGGTGTCCCTCTTCCCTTCCAAATCATCATCTTGATTGCTGTGCTTCCGATTTTT
TATTCCGCCTACTATGTCTTTTCCCAAATGGTTCGATACATTCGTTGGGATCGTTTTAAAAAGTCAGCTCACTTACGTTT
GGTGGGTCTTGTCGTTGGGTTTGGTGCTTTTGCAAGTGCCATTGGTGTGTATACCCTATTCTTTCATGCAAGGCATGGGC
TTCAAATTGTTTCGACTTTTATAGGATTTTTAATCATCGGCATCTATCTATTACGCCAAAAAAGCCCTGAACTTTGGGGA
GAGGTCCAAAGAATTGTTATCGAAGAAAAAAAATACCAAACATCTCAATTGGGATCCTTTGATTTAGAAGACCTCCACGA
ACGACTGAAGTTGCTAATGGAAACCAAAAAAGTGTATTTGGATGAAACCATCAATTTAGAAAAACTTGCCAAACAAATGA
ATTTATCAGAACACCAGCTCTCTGAATTTCTCAATTCGCATTTGAAAAAAAGTTTTTTCCATTTGGTGAACCACTATCGG
ATCAAAGAAGCAAAAGACTTTTTTATTCAACATCCCGAAAAAAATATTTTAACCGTTGCTTACGAAGTTGGATTCCCGTC
CAAATCCACATTTTATGACGCCTTCAAACGTGAAGTGGGACAAAGTCCCAGTGAATACCGCAAGAATTTGAAAAAATAA

Upstream 100 bases:

>100_bases
TACCTTCCCACAAAAATGAAGATTGTCTTTGGTCAGATTCCACGTTTCAAACGTAAAACTAATTCAGAACGAAGGTTAGG
CAAGTGATTTTATTTTACAA

Downstream 100 bases:

>100_bases
AAACGAACGGATCGATTCGGAATCTTTTTTGATTCCGAATGGACCGATTCGGTCGATTCGTTAGACAAAACAGAGTAGAA
TGACTGAAGTCTAAAATTGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Domain Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Helix-TurN-Helix- Domain Containing Protein Arac Type; Two-Component Response Regulator; RhaRS Operon Positive Regulator; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Transcription Regulator; Response Regulator Receiver Protein

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MDAFFRTFYFMGNVMIHLIAFSAGLAFLFAIGEFLRTNSSRQTKVQGLLFLFAAFFQTHTYLTATELYQVYPHFYLVHLP
FTACIGSLLKQYFSELWNDSPNKNEFSYLELAPAFLVTFLMTPFYLSSAEEKIMIHQSYLKIGVPLPFQIIILIAVLPIF
YSAYYVFSQMVRYIRWDRFKKSAHLRLVGLVVGFGAFASAIGVYTLFFHARHGLQIVSTFIGFLIIGIYLLRQKSPELWG
EVQRIVIEEKKYQTSQLGSFDLEDLHERLKLLMETKKVYLDETINLEKLAKQMNLSEHQLSEFLNSHLKKSFFHLVNHYR
IKEAKDFFIQHPEKNILTVAYEVGFPSKSTFYDAFKREVGQSPSEYRKNLKK

Sequences:

>Translated_372_residues
MDAFFRTFYFMGNVMIHLIAFSAGLAFLFAIGEFLRTNSSRQTKVQGLLFLFAAFFQTHTYLTATELYQVYPHFYLVHLP
FTACIGSLLKQYFSELWNDSPNKNEFSYLELAPAFLVTFLMTPFYLSSAEEKIMIHQSYLKIGVPLPFQIIILIAVLPIF
YSAYYVFSQMVRYIRWDRFKKSAHLRLVGLVVGFGAFASAIGVYTLFFHARHGLQIVSTFIGFLIIGIYLLRQKSPELWG
EVQRIVIEEKKYQTSQLGSFDLEDLHERLKLLMETKKVYLDETINLEKLAKQMNLSEHQLSEFLNSHLKKSFFHLVNHYR
IKEAKDFFIQHPEKNILTVAYEVGFPSKSTFYDAFKREVGQSPSEYRKNLKK
>Mature_372_residues
MDAFFRTFYFMGNVMIHLIAFSAGLAFLFAIGEFLRTNSSRQTKVQGLLFLFAAFFQTHTYLTATELYQVYPHFYLVHLP
FTACIGSLLKQYFSELWNDSPNKNEFSYLELAPAFLVTFLMTPFYLSSAEEKIMIHQSYLKIGVPLPFQIIILIAVLPIF
YSAYYVFSQMVRYIRWDRFKKSAHLRLVGLVVGFGAFASAIGVYTLFFHARHGLQIVSTFIGFLIIGIYLLRQKSPELWG
EVQRIVIEEKKYQTSQLGSFDLEDLHERLKLLMETKKVYLDETINLEKLAKQMNLSEHQLSEFLNSHLKKSFFHLVNHYR
IKEAKDFFIQHPEKNILTVAYEVGFPSKSTFYDAFKREVGQSPSEYRKNLKK

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43479; Mature: 43479

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHCCC
>Mature Secondary Structure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CCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA