Click here to switch to the map view.

The map label for this gene is ppdA

Identifier: 18311270

GI number: 18311270

Start: 2632902

End: 2633324

Strand: Reverse

Name: ppdA

Synonym: CPE2288

Alternate gene names: 18311270

Gene position: 2633324-2632902 (Counterclockwise)

Preceding gene: 18311271

Following gene: 18311269

Centisome position: 86.87

GC content: 30.02

Gene sequence:

>423_bases
ATGTTATTACTGAAAGCAAGTGCAATATGTGGAAAAGGAAATGAAGGGAAAAGAAATAAGAAAGGGGGATTCACATTAAT
AGAATTAACTGTTGTTTTAGCTATTATGGCTATAATTTTAATGGTTATAGCTCCAAATTTTTCATATGTTAAGGATAGCG
CTAAGGCAAAAGTAGATAAACAAAATTGTGCTGCTATTGAAAGATCTGTGGAAATGTTATTGGCAGAAGATGCTATTTCA
AGTAGTGTTACAAATATAAAAATAACTTCAAGTAATGGAAATGTACAAATTTCAGGAATAAGTGATGATACGGGTAAAAG
TAAGTTACAAGATTTACTTGAAGATTTAGATAAGCCTCAAAGTGGAGACTCTTATAATGTAGATATAGAAAATGGAAGAA
AAGTTACGGTGTCTATAGTATAA

Upstream 100 bases:

>100_bases
CTTTTTTTGTGCATATAAATGGTAAAAATGTCCATAATACTAATATAAATCTAAAGTTAAAAAATATTTAACTTTAAAAA
ATATAAAAGGAGGACCATAA

Downstream 100 bases:

>100_bases
ATATACTTTAATTAAAGTAATTTCATAGGGGCTGTATAAAATATAATAATAAAACTTATTTTACTACATGCCCTTATTTT
TAGTATTTAAAAAGATTATA

Product: prepilin peptidase dependent protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MLLLKASAICGKGNEGKRNKKGGFTLIELTVVLAIMAIILMVIAPNFSYVKDSAKAKVDKQNCAAIERSVEMLLAEDAIS
SSVTNIKITSSNGNVQISGISDDTGKSKLQDLLEDLDKPQSGDSYNVDIENGRKVTVSIV

Sequences:

>Translated_140_residues
MLLLKASAICGKGNEGKRNKKGGFTLIELTVVLAIMAIILMVIAPNFSYVKDSAKAKVDKQNCAAIERSVEMLLAEDAIS
SSVTNIKITSSNGNVQISGISDDTGKSKLQDLLEDLDKPQSGDSYNVDIENGRKVTVSIV
>Mature_140_residues
MLLLKASAICGKGNEGKRNKKGGFTLIELTVVLAIMAIILMVIAPNFSYVKDSAKAKVDKQNCAAIERSVEMLLAEDAIS
SSVTNIKITSSNGNVQISGISDDTGKSKLQDLLEDLDKPQSGDSYNVDIENGRKVTVSIV

Specific function: Not yet known

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PPDA_CLOPE (P33555)

Other databases:

- EMBL:   X62914
- EMBL:   BA000016
- RefSeq:   NP_563204.1
- ProteinModelPortal:   P33555
- SMR:   P33555
- GeneID:   990641
- GenomeReviews:   BA000016_GR
- KEGG:   cpe:CPE2288
- NMPDR:   fig|195102.1.peg.2351
- HOGENOM:   HBG061662
- OMA:   KITSSNG
- ProtClustDB:   CLSK519398
- BioCyc:   CPER195102:CPE2288-MONOMER
- InterPro:   IPR012902
- InterPro:   IPR001120
- TIGRFAMs:   TIGR02532

Pfam domain/function: PF07963 N_methyl

EC number: NA

Molecular weight: Translated: 14931; Mature: 14931

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLKASAICGKGNEGKRNKKGGFTLIELTVVLAIMAIILMVIAPNFSYVKDSAKAKVDK
CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCH
QNCAAIERSVEMLLAEDAISSSVTNIKITSSNGNVQISGISDDTGKSKLQDLLEDLDKPQ
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
SGDSYNVDIENGRKVTVSIV
CCCCEEEEECCCCEEEEEEC
>Mature Secondary Structure
MLLLKASAICGKGNEGKRNKKGGFTLIELTVVLAIMAIILMVIAPNFSYVKDSAKAKVDK
CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCH
QNCAAIERSVEMLLAEDAISSSVTNIKITSSNGNVQISGISDDTGKSKLQDLLEDLDKPQ
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
SGDSYNVDIENGRKVTVSIV
CCCCEEEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1347462; 11792842; 7934814