Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18311261

Identifier: 18311261

GI number: 18311261

Start: 2622077

End: 2624185

Strand: Reverse

Name: 18311261

Synonym: CPE2279

Alternate gene names: NA

Gene position: 2624185-2622077 (Counterclockwise)

Preceding gene: 18311262

Following gene: 18311260

Centisome position: 86.57

GC content: 25.04

Gene sequence:

>2109_bases
ATGTTATACATGAAGAAGAAAAAAGGAGCTTCTCTTGCATATGTAATAGTAGTCTTGGCAATAATTGCAACAATAGGTAC
AGCTATAGTTTCACTTTCTTTAGCAAATTATAAAGCTATAATAGTTGATTCTAAAAAAACTCAAAATTTATATATGTCAG
AATCAGGGTTAGATGAGGCTAAAGTCAAAATTAATAATTTGACTTCAAAGGCTGTAGAAGCGGGAAATGATGCGGTAACT
AAAAGTAGTATTGAAAATTTAACTTCTGAAAATATAGAAAGTACTCAAAATGAGATTTTTAAAAAGGAATATAAAAAATA
CATACAGAATAATCTTAAAAGTTTATTTAAAATTAAAGATGGACATGTCTTGTTTAATACAAAAGGATTTAAATATGAAA
AAGAAGATAATTATTATGATATAGAATTAGTTTCTATAAATAATAATAAATTAGAGTTAGTTAATAAAATAAACCAATTA
GGTGATTTGGATAAAAACTTTATTTTTGAATTATCAGGAAATAAAAAAAGTGATAAGGAGATTCTAACTCTAAGATTAAA
TTCAAAATTTAATGTTAAAGATGGAAATGAAATTAAAAACTATAAGGATGTATCATTAACTTTTGAGATAGAAGTGCCAG
ATTATAATGGAGCATATTATACAGAAAAGATACCAGTATATAATATATGGCAACAAGGTTTAGTGGTAGGTGAAAATCTT
AATATTAATCAAAATAGCAATTTAAATATAAATGGAAGTGCTTATGTTTCGGCAAATTATAGTTTTGAAGATAATAAGTC
ATATAAAAATTCAAGTCAAAACAAAAATGCAAGTGGAATAGTTATTTCTGGTGGTGATTTAAGTGTAGATAACGGAATTT
TAGTTAGTAAGCAAGACATAATTCTTAATGGAGAGAATGGAGAACTTAAAGTTTTATCTTCATTAGGTGGAAATAATGGG
GGAGTGTATACACATAATCTTGGTATATATTCTTTTGAAAATCTCAATTCTAATAAAGTTTTTGGTAATAGTGAAACTTT
AGAGGGAAATAAGATTGACACTAAGGTTCCTGTTTATACTATGAATGATTTAATAATGAATGGATTAAACTCAACAATAA
AACTTCAAGATGGTTTTTATGGAATAAACAGTAACTCTGGTGATAAAACTTTAACTGGAGAAAAACAAAATTCAAGTGCT
ATAATAATAAATTCAAAAGATTTAGGCAATGGATCAAGTTTAGATATCAAGAATAAAGCTGTAATAATGGGAAGTGCATA
TATAAATACTTTAGGTGAAAGTTACCAAACAGGGGAGTCTTTAGCTGTAAAGGGAAATTATGTAGCTTATACATATGCGG
TTAAAGGTAAAGATGTTGAGTTTAAATATTATAATCCGCTACAGTTAGTTGAGAGAATAAATGGAGATAGCAGTTTAGAC
GCTAAAGCTAAATACTTTAAGGAAGCTAGTAAGAATTTTAATATAAAAAGTAATGGAATAAAATTACCTAGTTCTGATGA
TGTAATAAGTGTTGGGGTAACTGTAGATGGTAATAATGATATAAAAGGAAACAACTTAATTTTAGATGATATTAAAAAAA
TAAGAGAAGAGTATGTAGATAATTATTTTAGAAAAGTAAATGTAGTAAATACAGAAACAACAATTTCTAGAGAAAAGAAA
TATACAAATAAAATTACAAAGGATAATGATTTAATATATATTGATATAAATAATGGAGCTAATGTTCTAAAAAATATAGA
GAATAGTCCGTTGAAAATAAAAGATAAATTAATAACAATAAATAAAAGTTGTAATGGGATTATTATAACAGATAAAGATA
TAAAAATAGATAGTAGTATAGATTTTAAGGGAACTATAATAACTACTGGGAATTTAGATGTTTTAAATAAGGATACGGCT
AAAAAACAAAATATAAGTATAACTTATGATGAAGAATATTTAAAACAATTAATAGGAAGTAATTATGAAGATTTTAAAGG
AGTATTTACTGGAAATCCAGATTCTACTTACTTATTAGTGAAATCAGAAAAAGATATAAATGATATAACTTTAGATTTAG
TTAAAACAAGTAATTGGGAAGTAAACTAA

Upstream 100 bases:

>100_bases
GACAATAAAGTTGGTTTATATGATATAGATTTAAATGTTAATTATGGAAATCAAGAGATATATAGTATAAAGGCTACAGA
ATTTATAGGAGAGTGATAAT

Downstream 100 bases:

>100_bases
CTATTAAGAGAAAGATGGTGATTAAATGAAAAATTTAAAATTAAGAAAAAGAGGTCTTTCTCTTATAGAATTAGTTGTAG
CACTATCATTAATAACAATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 702; Mature: 702

Protein sequence:

>702_residues
MLYMKKKKGASLAYVIVVLAIIATIGTAIVSLSLANYKAIIVDSKKTQNLYMSESGLDEAKVKINNLTSKAVEAGNDAVT
KSSIENLTSENIESTQNEIFKKEYKKYIQNNLKSLFKIKDGHVLFNTKGFKYEKEDNYYDIELVSINNNKLELVNKINQL
GDLDKNFIFELSGNKKSDKEILTLRLNSKFNVKDGNEIKNYKDVSLTFEIEVPDYNGAYYTEKIPVYNIWQQGLVVGENL
NINQNSNLNINGSAYVSANYSFEDNKSYKNSSQNKNASGIVISGGDLSVDNGILVSKQDIILNGENGELKVLSSLGGNNG
GVYTHNLGIYSFENLNSNKVFGNSETLEGNKIDTKVPVYTMNDLIMNGLNSTIKLQDGFYGINSNSGDKTLTGEKQNSSA
IIINSKDLGNGSSLDIKNKAVIMGSAYINTLGESYQTGESLAVKGNYVAYTYAVKGKDVEFKYYNPLQLVERINGDSSLD
AKAKYFKEASKNFNIKSNGIKLPSSDDVISVGVTVDGNNDIKGNNLILDDIKKIREEYVDNYFRKVNVVNTETTISREKK
YTNKITKDNDLIYIDINNGANVLKNIENSPLKIKDKLITINKSCNGIIITDKDIKIDSSIDFKGTIITTGNLDVLNKDTA
KKQNISITYDEEYLKQLIGSNYEDFKGVFTGNPDSTYLLVKSEKDINDITLDLVKTSNWEVN

Sequences:

>Translated_702_residues
MLYMKKKKGASLAYVIVVLAIIATIGTAIVSLSLANYKAIIVDSKKTQNLYMSESGLDEAKVKINNLTSKAVEAGNDAVT
KSSIENLTSENIESTQNEIFKKEYKKYIQNNLKSLFKIKDGHVLFNTKGFKYEKEDNYYDIELVSINNNKLELVNKINQL
GDLDKNFIFELSGNKKSDKEILTLRLNSKFNVKDGNEIKNYKDVSLTFEIEVPDYNGAYYTEKIPVYNIWQQGLVVGENL
NINQNSNLNINGSAYVSANYSFEDNKSYKNSSQNKNASGIVISGGDLSVDNGILVSKQDIILNGENGELKVLSSLGGNNG
GVYTHNLGIYSFENLNSNKVFGNSETLEGNKIDTKVPVYTMNDLIMNGLNSTIKLQDGFYGINSNSGDKTLTGEKQNSSA
IIINSKDLGNGSSLDIKNKAVIMGSAYINTLGESYQTGESLAVKGNYVAYTYAVKGKDVEFKYYNPLQLVERINGDSSLD
AKAKYFKEASKNFNIKSNGIKLPSSDDVISVGVTVDGNNDIKGNNLILDDIKKIREEYVDNYFRKVNVVNTETTISREKK
YTNKITKDNDLIYIDINNGANVLKNIENSPLKIKDKLITINKSCNGIIITDKDIKIDSSIDFKGTIITTGNLDVLNKDTA
KKQNISITYDEEYLKQLIGSNYEDFKGVFTGNPDSTYLLVKSEKDINDITLDLVKTSNWEVN
>Mature_702_residues
MLYMKKKKGASLAYVIVVLAIIATIGTAIVSLSLANYKAIIVDSKKTQNLYMSESGLDEAKVKINNLTSKAVEAGNDAVT
KSSIENLTSENIESTQNEIFKKEYKKYIQNNLKSLFKIKDGHVLFNTKGFKYEKEDNYYDIELVSINNNKLELVNKINQL
GDLDKNFIFELSGNKKSDKEILTLRLNSKFNVKDGNEIKNYKDVSLTFEIEVPDYNGAYYTEKIPVYNIWQQGLVVGENL
NINQNSNLNINGSAYVSANYSFEDNKSYKNSSQNKNASGIVISGGDLSVDNGILVSKQDIILNGENGELKVLSSLGGNNG
GVYTHNLGIYSFENLNSNKVFGNSETLEGNKIDTKVPVYTMNDLIMNGLNSTIKLQDGFYGINSNSGDKTLTGEKQNSSA
IIINSKDLGNGSSLDIKNKAVIMGSAYINTLGESYQTGESLAVKGNYVAYTYAVKGKDVEFKYYNPLQLVERINGDSSLD
AKAKYFKEASKNFNIKSNGIKLPSSDDVISVGVTVDGNNDIKGNNLILDDIKKIREEYVDNYFRKVNVVNTETTISREKK
YTNKITKDNDLIYIDINNGANVLKNIENSPLKIKDKLITINKSCNGIIITDKDIKIDSSIDFKGTIITTGNLDVLNKDTA
KKQNISITYDEEYLKQLIGSNYEDFKGVFTGNPDSTYLLVKSEKDINDITLDLVKTSNWEVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78011; Mature: 78011

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYMKKKKGASLAYVIVVLAIIATIGTAIVSLSLANYKAIIVDSKKTQNLYMSESGLDEA
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCCCCEEEECCCCCCCC
KVKINNLTSKAVEAGNDAVTKSSIENLTSENIESTQNEIFKKEYKKYIQNNLKSLFKIKD
EEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
GHVLFNTKGFKYEKEDNYYDIELVSINNNKLELVNKINQLGDLDKNFIFELSGNKKSDKE
CEEEEECCCCEEECCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCE
ILTLRLNSKFNVKDGNEIKNYKDVSLTFEIEVPDYNGAYYTEKIPVYNIWQQGLVVGENL
EEEEEECCEECCCCCCCCCCEEEEEEEEEEECCCCCCCEEEECCCCEEECCCCEEECCCC
NINQNSNLNINGSAYVSANYSFEDNKSYKNSSQNKNASGIVISGGDLSVDNGILVSKQDI
CCCCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCEEEECCEE
ILNGENGELKVLSSLGGNNGGVYTHNLGIYSFENLNSNKVFGNSETLEGNKIDTKVPVYT
EEECCCCCEEEEEECCCCCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCCEEE
MNDLIMNGLNSTIKLQDGFYGINSNSGDKTLTGEKQNSSAIIINSKDLGNGSSLDIKNKA
HHHHHHCCCCCEEEEECCEEECCCCCCCCEECCCCCCCCEEEEECCCCCCCCCEEECCCE
VIMGSAYINTLGESYQTGESLAVKGNYVAYTYAVKGKDVEFKYYNPLQLVERINGDSSLD
EEEEHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEEECCHHHHHHHCCCCCCCC
AKAKYFKEASKNFNIKSNGIKLPSSDDVISVGVTVDGNNDIKGNNLILDDIKKIREEYVD
HHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHH
NYFRKVNVVNTETTISREKKYTNKITKDNDLIYIDINNGANVLKNIENSPLKIKDKLITI
HHHHEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEEEEEE
NKSCNGIIITDKDIKIDSSIDFKGTIITTGNLDVLNKDTAKKQNISITYDEEYLKQLIGS
ECCCCEEEEECCCEEECCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECHHHHHHHHCC
NYEDFKGVFTGNPDSTYLLVKSEKDINDITLDLVKTSNWEVN
CCCHHCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MLYMKKKKGASLAYVIVVLAIIATIGTAIVSLSLANYKAIIVDSKKTQNLYMSESGLDEA
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEECCCCCEEEECCCCCCCC
KVKINNLTSKAVEAGNDAVTKSSIENLTSENIESTQNEIFKKEYKKYIQNNLKSLFKIKD
EEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
GHVLFNTKGFKYEKEDNYYDIELVSINNNKLELVNKINQLGDLDKNFIFELSGNKKSDKE
CEEEEECCCCEEECCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCE
ILTLRLNSKFNVKDGNEIKNYKDVSLTFEIEVPDYNGAYYTEKIPVYNIWQQGLVVGENL
EEEEEECCEECCCCCCCCCCEEEEEEEEEEECCCCCCCEEEECCCCEEECCCCEEECCCC
NINQNSNLNINGSAYVSANYSFEDNKSYKNSSQNKNASGIVISGGDLSVDNGILVSKQDI
CCCCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCEEEECCEE
ILNGENGELKVLSSLGGNNGGVYTHNLGIYSFENLNSNKVFGNSETLEGNKIDTKVPVYT
EEECCCCCEEEEEECCCCCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCCEEE
MNDLIMNGLNSTIKLQDGFYGINSNSGDKTLTGEKQNSSAIIINSKDLGNGSSLDIKNKA
HHHHHHCCCCCEEEEECCEEECCCCCCCCEECCCCCCCCEEEEECCCCCCCCCEEECCCE
VIMGSAYINTLGESYQTGESLAVKGNYVAYTYAVKGKDVEFKYYNPLQLVERINGDSSLD
EEEEHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEEECCHHHHHHHCCCCCCCC
AKAKYFKEASKNFNIKSNGIKLPSSDDVISVGVTVDGNNDIKGNNLILDDIKKIREEYVD
HHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHH
NYFRKVNVVNTETTISREKKYTNKITKDNDLIYIDINNGANVLKNIENSPLKIKDKLITI
HHHHEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEEEEEE
NKSCNGIIITDKDIKIDSSIDFKGTIITTGNLDVLNKDTAKKQNISITYDEEYLKQLIGS
ECCCCEEEEECCCEEECCCCCCEEEEEEECCCEEECCCCCCCCCEEEEECHHHHHHHHCC
NYEDFKGVFTGNPDSTYLLVKSEKDINDITLDLVKTSNWEVN
CCCHHCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA