Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18311259
Identifier: 18311259
GI number: 18311259
Start: 2618846
End: 2621467
Strand: Reverse
Name: 18311259
Synonym: CPE2277
Alternate gene names: NA
Gene position: 2621467-2618846 (Counterclockwise)
Preceding gene: 18311260
Following gene: 18311258
Centisome position: 86.48
GC content: 27.5
Gene sequence:
>2622_bases TTGATTAAGTTAGTTGATAATAGAAGAAATATTTTTATTTTTATATTAATAATAGGGATAATAAGTTTAGTAAGCTTAAA GGTTTTAGCATATGAAATACCATACATGTCAATAAACACTGATACTACAAATTATATGATTAATAATGGAGAAGAGGTTA GTGTAACTTATGTAGTTCAGCCACAAGATTTAGATCCTAGTTATTTTGGATATAGTAATAGAAAACAACCTAATAGTAGA GAAGAACTCAATTATGCAACATTAGACTTAAATATTCCAGATGGAATACAGGTAAAAGATATAAAATTTAATCAAAATGG AATAATTCAAAATATTGATTTAAATTCAATGAATCTGCCTAGTATTCAGTATCAATCTGTAGGAAGTTGGAAGTGGAGTT GGGGTTGGTATTGGAGTGGGTATTTTAAAGCTAATTCATTTGAGATAACTATAAAATACGTTGGTAATAATTTAAGTAAT AAGGCTGTTAAGGAGTACGTAATAGGGGGGAATATAAAAGTAGGTTGGGAAAGTGTTGGAGATTTACCCAATGTAAGATT AAGTGTTAATAAAAAGTTAAGCGTTAATATATCTGTAAGTGATTCAAGAGGAAACTTAGGGAAGCCATATAATACATTAG ATGATGAAAAAAATGGACTTAATTATGAAGATTTAACTCAAGATAATACCTTAATAGGAAGAGGTTTAGTTAATTTTAAA GTTTCAGGAATAGCAAAGAATAAAAATAGTGATTATTATTTAAAATACAGATTTATAAAAAAAGGACAAGATGACAATAC TAAATGGAAAAGTATACTATTAACTACAAATAGTATAAATGCAGATATAGATTATGATAATCCTAATAATTTAACATTTA GATCTTACGATGTTAACCATTTGCCTACATTAAGTGGTAATAGCCAATGGTCTGACCCTAATTTAGTATTTAAAAATCCA TCAAGTAATATAAAATATTTACCTACAACTGTTGCTAGTAGCAAAAGTCAATATGGACATTTAACTAGTTATATTGATAG TGATGGGATAACACAATACAAATGGGTACCTAATATGACTTTTTATAATAATATGTATATTGGTGGAGATTATAAAGAGG CAGCCAAATATTGGGGATACATAAAACCTAAAAAAACTGGGTGGTATATATTGGGTATACTATCTGATGATGGTGCTAAG GGAACTATTACAGCCGATGGAAAAGCATATGAATTTTCAAAGAATGGATTTTATCCTCATGGGGTACAGTATTTTTCAAA TCGTGATGCAAATCCAATATATTTAAGTGAAGATGAATATTATCCTATATCATTAGAATATTTTAACTGGGGAGGGGGAG GTGCCTTCAAAGTAGGGTATAAATATAGTGAATATAGAGATTATGGATATAAATATGGAGAACCTGATTATATGGGGGAG GATGGATCTGCATTTACTTTCTATCCTTCAAAAAGTAAAGAACCAGGTGAAAATGCCGATGGAATATTTACTGGTGGAAA GGATGGAATACCATTTCCATCAGAAGAAGGTAGTTACTACATCGATTATAGAATAGTATCTATAGATAAGAATAATGATT CAAATCAAGAGGTGTTAAAGGAAGGTAAATATGGTTATTTTAATGTAGAGAATAGATTTATTACTAATATAAGTATAGAA AATGGAGAAAAATTAATCCAAGGGAAAAAATATGATTTAAAATATACATTAAAACCTAAGTCTATTGCGACTAAAGATAT AAGTAATATTTCTAGTGACAAGTTACCAGATACTATAAGACTAACTGATATAAAAATAAATGGAATGTTACCTCCAGGAA TTAAGTTCGTTTCAAAAAGCAATAGTAATTTAAATGAGAATTCAAATAGCTATTATATCATAGAAAAGTCTGGTGATGAG ACACCAAATGGTACTAATTTTACAATTAAATTTAGTAATGATTTGGTTTATACTTTAGATAAAAGTGATATGATGTATAA AGCTGAAATCATAGAAATTCCAGTTAAAATACAAATTGGTAGAATTGGAGAATTTATCTTTAATGGAAATGATAATAGAA TTACTTATAAATATTCGGGAAAGGATATGGCAACTATAACTCAATATTTTCCTACAATAAATATAAATGCTATAAGTAGT TCTAAAATAATTAAGATGGGAATTTTAGATTCAGCAGTTAAACCTAGTAATATTGGAAATGTTAATAGTATAAGTAATGT AGTAAATGGAATTCCAAGTAAAGTTGCATTAAGTGTAAAAATAAATTCATTAGGAACTATTATTAATGTTTCTTTAAATT CAAATTACTTAAGAACAGGAAATAGAGATATAACTGTAAGTAAATATAAGATAATAAATGGAAATGTTGACTTTGGAAAA TCTGAAACTGCAGAATTTAGTTTAAACAATAATAATATATCCATAAAAGATAAAGATAAATTTAAATTAGAAGAAGGTAC TGATTATTTAATTGTTATAAATATTACACCAGACATACCAAATGGGGAACAATTAAAAGTAGAGGGCTCTATTGAAGGTG CAAGTGATATGGATAAGCATTATGCAATTCTTCAGCCAACAGAAATGCCAGATGTATTTTAA
Upstream 100 bases:
>100_bases TAAAAATAGAATTTGATACTAAGAATGCTACTCCATATGAGGTTAGTAATATATTAACTTTTAGAAATAAAAAATAAAAG ATGGGTTGGAGGTGAAATAG
Downstream 100 bases:
>100_bases TCTAAAAGAAAAATAAGATCACATGAATTAATTTGTGGTCTTATTTTTGTATTTATTAATAAATTTTAGAGCATAATATA TTTAATTAAGACTTAAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 873; Mature: 873
Protein sequence:
>873_residues MIKLVDNRRNIFIFILIIGIISLVSLKVLAYEIPYMSINTDTTNYMINNGEEVSVTYVVQPQDLDPSYFGYSNRKQPNSR EELNYATLDLNIPDGIQVKDIKFNQNGIIQNIDLNSMNLPSIQYQSVGSWKWSWGWYWSGYFKANSFEITIKYVGNNLSN KAVKEYVIGGNIKVGWESVGDLPNVRLSVNKKLSVNISVSDSRGNLGKPYNTLDDEKNGLNYEDLTQDNTLIGRGLVNFK VSGIAKNKNSDYYLKYRFIKKGQDDNTKWKSILLTTNSINADIDYDNPNNLTFRSYDVNHLPTLSGNSQWSDPNLVFKNP SSNIKYLPTTVASSKSQYGHLTSYIDSDGITQYKWVPNMTFYNNMYIGGDYKEAAKYWGYIKPKKTGWYILGILSDDGAK GTITADGKAYEFSKNGFYPHGVQYFSNRDANPIYLSEDEYYPISLEYFNWGGGGAFKVGYKYSEYRDYGYKYGEPDYMGE DGSAFTFYPSKSKEPGENADGIFTGGKDGIPFPSEEGSYYIDYRIVSIDKNNDSNQEVLKEGKYGYFNVENRFITNISIE NGEKLIQGKKYDLKYTLKPKSIATKDISNISSDKLPDTIRLTDIKINGMLPPGIKFVSKSNSNLNENSNSYYIIEKSGDE TPNGTNFTIKFSNDLVYTLDKSDMMYKAEIIEIPVKIQIGRIGEFIFNGNDNRITYKYSGKDMATITQYFPTININAISS SKIIKMGILDSAVKPSNIGNVNSISNVVNGIPSKVALSVKINSLGTIINVSLNSNYLRTGNRDITVSKYKIINGNVDFGK SETAEFSLNNNNISIKDKDKFKLEEGTDYLIVINITPDIPNGEQLKVEGSIEGASDMDKHYAILQPTEMPDVF
Sequences:
>Translated_873_residues MIKLVDNRRNIFIFILIIGIISLVSLKVLAYEIPYMSINTDTTNYMINNGEEVSVTYVVQPQDLDPSYFGYSNRKQPNSR EELNYATLDLNIPDGIQVKDIKFNQNGIIQNIDLNSMNLPSIQYQSVGSWKWSWGWYWSGYFKANSFEITIKYVGNNLSN KAVKEYVIGGNIKVGWESVGDLPNVRLSVNKKLSVNISVSDSRGNLGKPYNTLDDEKNGLNYEDLTQDNTLIGRGLVNFK VSGIAKNKNSDYYLKYRFIKKGQDDNTKWKSILLTTNSINADIDYDNPNNLTFRSYDVNHLPTLSGNSQWSDPNLVFKNP SSNIKYLPTTVASSKSQYGHLTSYIDSDGITQYKWVPNMTFYNNMYIGGDYKEAAKYWGYIKPKKTGWYILGILSDDGAK GTITADGKAYEFSKNGFYPHGVQYFSNRDANPIYLSEDEYYPISLEYFNWGGGGAFKVGYKYSEYRDYGYKYGEPDYMGE DGSAFTFYPSKSKEPGENADGIFTGGKDGIPFPSEEGSYYIDYRIVSIDKNNDSNQEVLKEGKYGYFNVENRFITNISIE NGEKLIQGKKYDLKYTLKPKSIATKDISNISSDKLPDTIRLTDIKINGMLPPGIKFVSKSNSNLNENSNSYYIIEKSGDE TPNGTNFTIKFSNDLVYTLDKSDMMYKAEIIEIPVKIQIGRIGEFIFNGNDNRITYKYSGKDMATITQYFPTININAISS SKIIKMGILDSAVKPSNIGNVNSISNVVNGIPSKVALSVKINSLGTIINVSLNSNYLRTGNRDITVSKYKIINGNVDFGK SETAEFSLNNNNISIKDKDKFKLEEGTDYLIVINITPDIPNGEQLKVEGSIEGASDMDKHYAILQPTEMPDVF >Mature_873_residues MIKLVDNRRNIFIFILIIGIISLVSLKVLAYEIPYMSINTDTTNYMINNGEEVSVTYVVQPQDLDPSYFGYSNRKQPNSR EELNYATLDLNIPDGIQVKDIKFNQNGIIQNIDLNSMNLPSIQYQSVGSWKWSWGWYWSGYFKANSFEITIKYVGNNLSN KAVKEYVIGGNIKVGWESVGDLPNVRLSVNKKLSVNISVSDSRGNLGKPYNTLDDEKNGLNYEDLTQDNTLIGRGLVNFK VSGIAKNKNSDYYLKYRFIKKGQDDNTKWKSILLTTNSINADIDYDNPNNLTFRSYDVNHLPTLSGNSQWSDPNLVFKNP SSNIKYLPTTVASSKSQYGHLTSYIDSDGITQYKWVPNMTFYNNMYIGGDYKEAAKYWGYIKPKKTGWYILGILSDDGAK GTITADGKAYEFSKNGFYPHGVQYFSNRDANPIYLSEDEYYPISLEYFNWGGGGAFKVGYKYSEYRDYGYKYGEPDYMGE DGSAFTFYPSKSKEPGENADGIFTGGKDGIPFPSEEGSYYIDYRIVSIDKNNDSNQEVLKEGKYGYFNVENRFITNISIE NGEKLIQGKKYDLKYTLKPKSIATKDISNISSDKLPDTIRLTDIKINGMLPPGIKFVSKSNSNLNENSNSYYIIEKSGDE TPNGTNFTIKFSNDLVYTLDKSDMMYKAEIIEIPVKIQIGRIGEFIFNGNDNRITYKYSGKDMATITQYFPTININAISS SKIIKMGILDSAVKPSNIGNVNSISNVVNGIPSKVALSVKINSLGTIINVSLNSNYLRTGNRDITVSKYKIINGNVDFGK SETAEFSLNNNNISIKDKDKFKLEEGTDYLIVINITPDIPNGEQLKVEGSIEGASDMDKHYAILQPTEMPDVF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98416; Mature: 98416
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKLVDNRRNIFIFILIIGIISLVSLKVLAYEIPYMSINTDTTNYMINNGEEVSVTYVVQ CEEEEECCCCEEEEEHHHHHHHHHHEEEEEEECCEEEECCCCCEEEECCCCEEEEEEEEC PQDLDPSYFGYSNRKQPNSREELNYATLDLNIPDGIQVKDIKFNQNGIIQNIDLNSMNLP CCCCCCHHCCCCCCCCCCCHHHCEEEEEEEECCCCCEEEEEEECCCCCEEEECCCCCCCC SIQYQSVGSWKWSWGWYWSGYFKANSFEITIKYVGNNLSNKAVKEYVIGGNIKVGWESVG CEEEECCCCEEEECCEEEEEEEECCEEEEEEEEECCCCCCHHHHHEEECCCEEECHHHCC DLPNVRLSVNKKLSVNISVSDSRGNLGKPYNTLDDEKNGLNYEDLTQDNTLIGRGLVNFK CCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCEEEEE VSGIAKNKNSDYYLKYRFIKKGQDDNTKWKSILLTTNSINADIDYDNPNNLTFRSYDVNH EEEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEEECCCEEEECCCCCCCEEEEEECCCC LPTLSGNSQWSDPNLVFKNPSSNIKYLPTTVASSKSQYGHLTSYIDSDGITQYKWVPNMT CCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCE FYNNMYIGGDYKEAAKYWGYIKPKKTGWYILGILSDDGAKGTITADGKAYEFSKNGFYPH EECCEEECCCHHHHHHHCCEECCCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCCCCC GVQYFSNRDANPIYLSEDEYYPISLEYFNWGGGGAFKVGYKYSEYRDYGYKYGEPDYMGE CHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCEEEECEEEHHHHHCCCCCCCCCCCCC DGSAFTFYPSKSKEPGENADGIFTGGKDGIPFPSEEGSYYIDYRIVSIDKNNDSNQEVLK CCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHH EGKYGYFNVENRFITNISIENGEKLIQGKKYDLKYTLKPKSIATKDISNISSDKLPDTIR CCCCCEEEECCEEEEEEEECCCHHHHCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCEEE LTDIKINGMLPPGIKFVSKSNSNLNENSNSYYIIEKSGDETPNGTNFTIKFSNDLVYTLD EEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEC KSDMMYKAEIIEIPVKIQIGRIGEFIFNGNDNRITYKYSGKDMATITQYFPTININAISS CCCCEEEEEEEEEEEEEEECCEEEEEECCCCCEEEEEECCCCCEEHHHHCCEEEEEEECC SKIIKMGILDSAVKPSNIGNVNSISNVVNGIPSKVALSVKINSLGTIINVSLNSNYLRTG CCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCCEEECC NRDITVSKYKIINGNVDFGKSETAEFSLNNNNISIKDKDKFKLEEGTDYLIVINITPDIP CCEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEECCCCEEEECCCCEEEEEEECCCCC NGEQLKVEGSIEGASDMDKHYAILQPTEMPDVF CCCEEEEEECCCCCCCCCCCEEEECCCCCCCCC >Mature Secondary Structure MIKLVDNRRNIFIFILIIGIISLVSLKVLAYEIPYMSINTDTTNYMINNGEEVSVTYVVQ CEEEEECCCCEEEEEHHHHHHHHHHEEEEEEECCEEEECCCCCEEEECCCCEEEEEEEEC PQDLDPSYFGYSNRKQPNSREELNYATLDLNIPDGIQVKDIKFNQNGIIQNIDLNSMNLP CCCCCCHHCCCCCCCCCCCHHHCEEEEEEEECCCCCEEEEEEECCCCCEEEECCCCCCCC SIQYQSVGSWKWSWGWYWSGYFKANSFEITIKYVGNNLSNKAVKEYVIGGNIKVGWESVG CEEEECCCCEEEECCEEEEEEEECCEEEEEEEEECCCCCCHHHHHEEECCCEEECHHHCC DLPNVRLSVNKKLSVNISVSDSRGNLGKPYNTLDDEKNGLNYEDLTQDNTLIGRGLVNFK CCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCEEEEE VSGIAKNKNSDYYLKYRFIKKGQDDNTKWKSILLTTNSINADIDYDNPNNLTFRSYDVNH EEEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEEECCCEEEECCCCCCCEEEEEECCCC LPTLSGNSQWSDPNLVFKNPSSNIKYLPTTVASSKSQYGHLTSYIDSDGITQYKWVPNMT CCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCE FYNNMYIGGDYKEAAKYWGYIKPKKTGWYILGILSDDGAKGTITADGKAYEFSKNGFYPH EECCEEECCCHHHHHHHCCEECCCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCCCCC GVQYFSNRDANPIYLSEDEYYPISLEYFNWGGGGAFKVGYKYSEYRDYGYKYGEPDYMGE CHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCEEEECEEEHHHHHCCCCCCCCCCCCC DGSAFTFYPSKSKEPGENADGIFTGGKDGIPFPSEEGSYYIDYRIVSIDKNNDSNQEVLK CCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHH EGKYGYFNVENRFITNISIENGEKLIQGKKYDLKYTLKPKSIATKDISNISSDKLPDTIR CCCCCEEEECCEEEEEEEECCCHHHHCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCEEE LTDIKINGMLPPGIKFVSKSNSNLNENSNSYYIIEKSGDETPNGTNFTIKFSNDLVYTLD EEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEC KSDMMYKAEIIEIPVKIQIGRIGEFIFNGNDNRITYKYSGKDMATITQYFPTININAISS CCCCEEEEEEEEEEEEEEECCEEEEEECCCCCEEEEEECCCCCEEHHHHCCEEEEEEECC SKIIKMGILDSAVKPSNIGNVNSISNVVNGIPSKVALSVKINSLGTIINVSLNSNYLRTG CCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCCEEECC NRDITVSKYKIINGNVDFGKSETAEFSLNNNNISIKDKDKFKLEEGTDYLIVINITPDIP CCEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEECCCCEEEECCCCEEEEEEECCCCC NGEQLKVEGSIEGASDMDKHYAILQPTEMPDVF CCCEEEEEECCCCCCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA