Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is yaiI [C]
Identifier: 18311248
GI number: 18311248
Start: 2604658
End: 2605107
Strand: Reverse
Name: yaiI [C]
Synonym: CPE2266
Alternate gene names: 18311248
Gene position: 2605107-2604658 (Counterclockwise)
Preceding gene: 18311249
Following gene: 18311247
Centisome position: 85.94
GC content: 29.33
Gene sequence:
>450_bases GTGAAAATAATTATTGATGGTGATGGATGTGCAGGAAGAGATATAATTGAAGAGGTTGGTAAAAAGCATTCAGTTAAAAT ATTAATTTATTGCACAATAAATCATATGATAAATTCAGATTACTCTGAGGTGAGAATGGTTGATGGTGGATTTCAAAGCG TAGATATGTATGTGGCTAATAATACTGAGGAAAATGATATTGTAATAACTCAAGATTATGGAGTTGCAGCTATGGCTTTA GGAAAAGGAGCTTTAGCCATTAGCCCTAGAGGATATATTTATGACAATGATAATATTGATAGATTACTTTTTGAAAGACA TTTAAGTCAAAAAAATAGAAGAGCTGGTGGGAAATCAAAAGGAAATCATAAAAGAAATAAAGAAGATGATGATAGACTTT ATTATAATTTAGAAGTTTTGATAGAAAAGGTAAAGGCTATTTTAAATTAG
Upstream 100 bases:
>100_bases TATTAGTAAATTAATAAGAATGTGTATAATTTTATTAATGGATAATTATTTAATATTCAAAAAAAGATAATAGAGAATAT ATTATGGGAGGATTATAAAG
Downstream 100 bases:
>100_bases ATATAATAAAATAAGGTTTGAAAAATTAAAAAATAAGTTTGGAAAATTAAAAAATAAACTTTGTAGAATTAGAAGATAAA CTTAATAAATAATGTAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 149
Protein sequence:
>149_residues MKIIIDGDGCAGRDIIEEVGKKHSVKILIYCTINHMINSDYSEVRMVDGGFQSVDMYVANNTEENDIVITQDYGVAAMAL GKGALAISPRGYIYDNDNIDRLLFERHLSQKNRRAGGKSKGNHKRNKEDDDRLYYNLEVLIEKVKAILN
Sequences:
>Translated_149_residues MKIIIDGDGCAGRDIIEEVGKKHSVKILIYCTINHMINSDYSEVRMVDGGFQSVDMYVANNTEENDIVITQDYGVAAMAL GKGALAISPRGYIYDNDNIDRLLFERHLSQKNRRAGGKSKGNHKRNKEDDDRLYYNLEVLIEKVKAILN >Mature_149_residues MKIIIDGDGCAGRDIIEEVGKKHSVKILIYCTINHMINSDYSEVRMVDGGFQSVDMYVANNTEENDIVITQDYGVAAMAL GKGALAISPRGYIYDNDNIDRLLFERHLSQKNRRAGGKSKGNHKRNKEDDDRLYYNLEVLIEKVKAILN
Specific function: Unknown
COG id: COG1671
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0178 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003791 [H]
Pfam domain/function: PF02639 DUF188 [H]
EC number: NA
Molecular weight: Translated: 16824; Mature: 16824
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIIDGDGCAGRDIIEEVGKKHSVKILIYCTINHMINSDYSEVRMVDGGFQSVDMYVAN CEEEECCCCCCCHHHHHHCCCCCCEEEEEEEEEECHHCCCCHHEEEECCCCCEEEEEEEC NTEENDIVITQDYGVAAMALGKGALAISPRGYIYDNDNIDRLLFERHLSQKNRRAGGKSK CCCCCCEEEECCCCEEEEEECCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC GNHKRNKEDDDRLYYNLEVLIEKVKAILN CCCCCCCCCCCCEEEHHHHHHHHHHHHCC >Mature Secondary Structure MKIIIDGDGCAGRDIIEEVGKKHSVKILIYCTINHMINSDYSEVRMVDGGFQSVDMYVAN CEEEECCCCCCCHHHHHHCCCCCCEEEEEEEEEECHHCCCCHHEEEECCCCCEEEEEEEC NTEENDIVITQDYGVAAMALGKGALAISPRGYIYDNDNIDRLLFERHLSQKNRRAGGKSK CCCCCCEEEECCCCEEEEEECCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC GNHKRNKEDDDRLYYNLEVLIEKVKAILN CCCCCCCCCCCCEEEHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA