Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18311247
Identifier: 18311247
GI number: 18311247
Start: 2602225
End: 2604285
Strand: Reverse
Name: 18311247
Synonym: CPE2265
Alternate gene names: NA
Gene position: 2604285-2602225 (Counterclockwise)
Preceding gene: 18311248
Following gene: 18311246
Centisome position: 85.91
GC content: 27.12
Gene sequence:
>2061_bases ATGGGAGAATTACTTTTAGAGTTAGATACGAGAGATATAATAGAACATAATAGTCCGGTTAACATAAAAATAATAAATAA CACTAATGACAATTTAAGATATAAAATCTTAATAGGAAAGGATGGAATTTGGGAAACTTTAAGGGAATTTGAAAAAGGAA ATGAATTTATCTGGAATCCTAAAGAAGATGGAGAGTATATGATTATGGTTCAAGGAAGAAAAGAGGATTCAAATAAGCCT TTTGATTACAAAGTTACTGAGGGAGTTAATGTGAAAAGAACAGTTCATGGCCTTCAAGATGAAATGAATAAAGATGAAAT AAATAAAGATGAAATTAAAGAAGAAAAATTAATAAAAGGAATCTATCTAAATAAAGATGTATTTAATGTTGGAGAGAAGG CAGAGTTAAAGGTTGATAGTAACAATGAAAATATTATGTATAGATATTTTATAAGTGGAAAGAACGGATGGCAACTTATA AAGGATTATACATTAGAAAATAAATTAAATTATACTATTAATGAAAGTGGTCAATTCGAGTTTTTAATTGAATGTAAAAA AACAAGTTCAACTAATACAACAGATGATTATGCCACAGTTATATTTACATCAAAAGAATTTGTAAAGCCTGAAATAATTA ATTTTATTAATTTAAGTGAAAAATTAATAGTAAATTCAGAGCTTACCTTTGAAGTGGAAGCAAATTTTGAAGATGAAAGA ACAGCACTATATAAGTTTGTAAAAATTTCACCTGATGGAAGTAGAACTTGCATTCAAGATTTTTCATCAAGCCGTATAGT AACTTTTAAAGAATTTAAAGAGGGAAGATATAAGCTTTTATGTTTAATAAGAGATATGTATTCTAATAAGGAATTTGATG ATAGAGCCGTTATGGTATATGATATAAAACCATATGAACCATTACAATTAAGAAGTTTTACTACAGATTTAAGCTCACCT CAAGAAAAAGGAGAGGTAATAGAGATAAAAGCTGTTATTGATGGAGGAAGTGATATCCTCTATAGATTTAAAATAGATGG AGAAATATCTGAGGATACGGGTTATACAAGAAATAGTACTTTAAAATGGAATGCTAAAAAAGAAGGAAATTATAGAATAA CTCTTTGGGCTAAGGATGAATCCTTTATTGGAGATTATGAAATAGAATCTAAATTAGATTATAAAATAGAAAAAAAGGTG AAAAAGCCAATAAAAATAACAGAATTAATATTTGATAGAGATAAGACCCCTTTAATAAATGAAGTAATAAAACTTAGGGT TAGTGCAGAGGGTGGTACTGACTTAAAATATTCCTTCTTAATAATTAAGGATGGTAAAACCATAGAAAGTATTGATTTTG GAAGTAATAATTGGGTAGAATTTATTCCAAATGAAAAAGGAAATTATCAGCTTGATGTAAGAGTAAAAGATAAGTATTCA ACAAAGGAATATGATGTGCATACTGTTTTAAATTTTAAAGTTAGGGAGTATGCAGAAGGGAAGATTGATCATATATTAGT TCCAGCAAAGGAATATTTTTTAGTTGGAGATGATATTGATATTGAAGTAATAGTTCAAAATACTAGACAAGTAAAGGTTA AGTATGTTACTAAGGTAAATGGACAAGTAGTAGAGGAAACTGATTATGTAAAAAATAAGAGGTTTAAAGTTACTCCAAAA TGTCCAGGAAAATACACAATTGATATATTTGCTAGAAATATTAAATGTAAAGAGGGATTTGATTCAAGAAGAGAAGTAAG ATTTTATGTTAGTGAAGCCTTACCTATTACAGGCACTAAAATAAGTACTTCTGATAAAGTCTTTAAAATTAATGAAGAGA TAAACTTTTCTACAAAATGTGAAGGTGGAAGTAGAGTTTGCTATGAATATTATATAATGGTTAACGGAAATTGGTCTTTA GTTCAAAAATATAGTAGAAAGAGTTATTATTCTTTTAGACCATATGTACCAGGAAAGTATAAAGTTTTAGTATTAACTAA AAGTTATTATAAAAAATGTGCTTATGAGGACTATGATACTTTTGAATTTAAGGTAGAATAA
Upstream 100 bases:
>100_bases GAGTGTTTTATGGTAAGAAAAATAGAAAATATTTACATAAAAACAGAAGTATAATATAATTTATTTATCTATAATGTTTC GGGTTTTAGGGGGAGTGATT
Downstream 100 bases:
>100_bases AATATTAAAGTTTAATATATATTTAGGACTTTGTTTTACATAATATTAATTTTAAGATAAGCTTTTAAGACTAATATTAG TTTTAAATTATTTGAATTTA
Product: triple tyrosine motif-containing protein
Products: NA
Alternate protein names: Triple Tyrosine Motif-Containing Protein; Two Component Regulator Three Y Motif Protein; Two Component Regulator Three Y Domain-Containing Protein; SpoIID-Like Domain-Containing Protein; SpoIID/LytB Domain-Containing Protein; SpoIID/LytB Domain Protein; Beta-N-Acetylglucosaminidase
Number of amino acids: Translated: 686; Mature: 685
Protein sequence:
>686_residues MGELLLELDTRDIIEHNSPVNIKIINNTNDNLRYKILIGKDGIWETLREFEKGNEFIWNPKEDGEYMIMVQGRKEDSNKP FDYKVTEGVNVKRTVHGLQDEMNKDEINKDEIKEEKLIKGIYLNKDVFNVGEKAELKVDSNNENIMYRYFISGKNGWQLI KDYTLENKLNYTINESGQFEFLIECKKTSSTNTTDDYATVIFTSKEFVKPEIINFINLSEKLIVNSELTFEVEANFEDER TALYKFVKISPDGSRTCIQDFSSSRIVTFKEFKEGRYKLLCLIRDMYSNKEFDDRAVMVYDIKPYEPLQLRSFTTDLSSP QEKGEVIEIKAVIDGGSDILYRFKIDGEISEDTGYTRNSTLKWNAKKEGNYRITLWAKDESFIGDYEIESKLDYKIEKKV KKPIKITELIFDRDKTPLINEVIKLRVSAEGGTDLKYSFLIIKDGKTIESIDFGSNNWVEFIPNEKGNYQLDVRVKDKYS TKEYDVHTVLNFKVREYAEGKIDHILVPAKEYFLVGDDIDIEVIVQNTRQVKVKYVTKVNGQVVEETDYVKNKRFKVTPK CPGKYTIDIFARNIKCKEGFDSRREVRFYVSEALPITGTKISTSDKVFKINEEINFSTKCEGGSRVCYEYYIMVNGNWSL VQKYSRKSYYSFRPYVPGKYKVLVLTKSYYKKCAYEDYDTFEFKVE
Sequences:
>Translated_686_residues MGELLLELDTRDIIEHNSPVNIKIINNTNDNLRYKILIGKDGIWETLREFEKGNEFIWNPKEDGEYMIMVQGRKEDSNKP FDYKVTEGVNVKRTVHGLQDEMNKDEINKDEIKEEKLIKGIYLNKDVFNVGEKAELKVDSNNENIMYRYFISGKNGWQLI KDYTLENKLNYTINESGQFEFLIECKKTSSTNTTDDYATVIFTSKEFVKPEIINFINLSEKLIVNSELTFEVEANFEDER TALYKFVKISPDGSRTCIQDFSSSRIVTFKEFKEGRYKLLCLIRDMYSNKEFDDRAVMVYDIKPYEPLQLRSFTTDLSSP QEKGEVIEIKAVIDGGSDILYRFKIDGEISEDTGYTRNSTLKWNAKKEGNYRITLWAKDESFIGDYEIESKLDYKIEKKV KKPIKITELIFDRDKTPLINEVIKLRVSAEGGTDLKYSFLIIKDGKTIESIDFGSNNWVEFIPNEKGNYQLDVRVKDKYS TKEYDVHTVLNFKVREYAEGKIDHILVPAKEYFLVGDDIDIEVIVQNTRQVKVKYVTKVNGQVVEETDYVKNKRFKVTPK CPGKYTIDIFARNIKCKEGFDSRREVRFYVSEALPITGTKISTSDKVFKINEEINFSTKCEGGSRVCYEYYIMVNGNWSL VQKYSRKSYYSFRPYVPGKYKVLVLTKSYYKKCAYEDYDTFEFKVE >Mature_685_residues GELLLELDTRDIIEHNSPVNIKIINNTNDNLRYKILIGKDGIWETLREFEKGNEFIWNPKEDGEYMIMVQGRKEDSNKPF DYKVTEGVNVKRTVHGLQDEMNKDEINKDEIKEEKLIKGIYLNKDVFNVGEKAELKVDSNNENIMYRYFISGKNGWQLIK DYTLENKLNYTINESGQFEFLIECKKTSSTNTTDDYATVIFTSKEFVKPEIINFINLSEKLIVNSELTFEVEANFEDERT ALYKFVKISPDGSRTCIQDFSSSRIVTFKEFKEGRYKLLCLIRDMYSNKEFDDRAVMVYDIKPYEPLQLRSFTTDLSSPQ EKGEVIEIKAVIDGGSDILYRFKIDGEISEDTGYTRNSTLKWNAKKEGNYRITLWAKDESFIGDYEIESKLDYKIEKKVK KPIKITELIFDRDKTPLINEVIKLRVSAEGGTDLKYSFLIIKDGKTIESIDFGSNNWVEFIPNEKGNYQLDVRVKDKYST KEYDVHTVLNFKVREYAEGKIDHILVPAKEYFLVGDDIDIEVIVQNTRQVKVKYVTKVNGQVVEETDYVKNKRFKVTPKC PGKYTIDIFARNIKCKEGFDSRREVRFYVSEALPITGTKISTSDKVFKINEEINFSTKCEGGSRVCYEYYIMVNGNWSLV QKYSRKSYYSFRPYVPGKYKVLVLTKSYYKKCAYEDYDTFEFKVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80242; Mature: 80111
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGELLLELDTRDIIEHNSPVNIKIINNTNDNLRYKILIGKDGIWETLREFEKGNEFIWNP CCCEEEEECCHHHHHCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECC KEDGEYMIMVQGRKEDSNKPFDYKVTEGVNVKRTVHGLQDEMNKDEINKDEIKEEKLIKG CCCCCEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEE IYLNKDVFNVGEKAELKVDSNNENIMYRYFISGKNGWQLIKDYTLENKLNYTINESGQFE EEECCHHHCCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCEEEEECCCCCEE FLIECKKTSSTNTTDDYATVIFTSKEFVKPEIINFINLSEKLIVNSELTFEVEANFEDER EEEEEECCCCCCCCCCEEEEEEECHHHCCCHHHHHCCCCCEEEEECEEEEEEECCCCCCC TALYKFVKISPDGSRTCIQDFSSSRIVTFKEFKEGRYKLLCLIRDMYSNKEFDDRAVMVY EEEEEEEEECCCCCHHHHHHCCCCEEEEEHHHCCCCEEEEEEEEHHHCCCCCCCCEEEEE DIKPYEPLQLRSFTTDLSSPQEKGEVIEIKAVIDGGSDILYRFKIDGEISEDTGYTRNST ECCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCEECCCCCCCCCCE LKWNAKKEGNYRITLWAKDESFIGDYEIESKLDYKIEKKVKKPIKITELIFDRDKTPLIN EEEECCCCCCEEEEEEECCCCCCCCEEECCCCCEEHHHHHCCCCEEEEHEECCCCCHHHH EVIKLRVSAEGGTDLKYSFLIIKDGKTIESIDFGSNNWVEFIPNEKGNYQLDVRVKDKYS HEEEEEEECCCCCCEEEEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEEECCCCC TKEYDVHTVLNFKVREYAEGKIDHILVPAKEYFLVGDDIDIEVIVQNTRQVKVKYVTKVN CCEEEEEEEEEEEEEECCCCCEEEEEECCCCEEEECCCCEEEEEEECCEEEEEEEEEECC GQVVEETDYVKNKRFKVTPKCPGKYTIDIFARNIKCKEGFDSRREVRFYVSEALPITGTK CEEEECCHHHCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCE ISTSDKVFKINEEINFSTKCEGGSRVCYEYYIMVNGNWSLVQKYSRKSYYSFRPYVPGKY ECCCCCEEEECCCCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCCCCEECCCCCCCE KVLVLTKSYYKKCAYEDYDTFEFKVE EEEEEEHHHHHHCCCCCCCCEEEEEC >Mature Secondary Structure GELLLELDTRDIIEHNSPVNIKIINNTNDNLRYKILIGKDGIWETLREFEKGNEFIWNP CCEEEEECCHHHHHCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECC KEDGEYMIMVQGRKEDSNKPFDYKVTEGVNVKRTVHGLQDEMNKDEINKDEIKEEKLIKG CCCCCEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEE IYLNKDVFNVGEKAELKVDSNNENIMYRYFISGKNGWQLIKDYTLENKLNYTINESGQFE EEECCHHHCCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCEEEEECCCCCEE FLIECKKTSSTNTTDDYATVIFTSKEFVKPEIINFINLSEKLIVNSELTFEVEANFEDER EEEEEECCCCCCCCCCEEEEEEECHHHCCCHHHHHCCCCCEEEEECEEEEEEECCCCCCC TALYKFVKISPDGSRTCIQDFSSSRIVTFKEFKEGRYKLLCLIRDMYSNKEFDDRAVMVY EEEEEEEEECCCCCHHHHHHCCCCEEEEEHHHCCCCEEEEEEEEHHHCCCCCCCCEEEEE DIKPYEPLQLRSFTTDLSSPQEKGEVIEIKAVIDGGSDILYRFKIDGEISEDTGYTRNST ECCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCEECCCCCCCCCCE LKWNAKKEGNYRITLWAKDESFIGDYEIESKLDYKIEKKVKKPIKITELIFDRDKTPLIN EEEECCCCCCEEEEEEECCCCCCCCEEECCCCCEEHHHHHCCCCEEEEHEECCCCCHHHH EVIKLRVSAEGGTDLKYSFLIIKDGKTIESIDFGSNNWVEFIPNEKGNYQLDVRVKDKYS HEEEEEEECCCCCCEEEEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEEECCCCC TKEYDVHTVLNFKVREYAEGKIDHILVPAKEYFLVGDDIDIEVIVQNTRQVKVKYVTKVN CCEEEEEEEEEEEEEECCCCCEEEEEECCCCEEEECCCCEEEEEEECCEEEEEEEEEECC GQVVEETDYVKNKRFKVTPKCPGKYTIDIFARNIKCKEGFDSRREVRFYVSEALPITGTK CEEEECCHHHCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCE ISTSDKVFKINEEINFSTKCEGGSRVCYEYYIMVNGNWSLVQKYSRKSYYSFRPYVPGKY ECCCCCEEEECCCCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCCCCEECCCCCCCE KVLVLTKSYYKKCAYEDYDTFEFKVE EEEEEEHHHHHHCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA