Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18311245
Identifier: 18311245
GI number: 18311245
Start: 2599908
End: 2600579
Strand: Reverse
Name: 18311245
Synonym: CPE2263
Alternate gene names: NA
Gene position: 2600579-2599908 (Counterclockwise)
Preceding gene: 18311246
Following gene: 18311244
Centisome position: 85.79
GC content: 27.23
Gene sequence:
>672_bases ATGAGGAGAACTAAAAGCGTATTTTTATGTACACTTTTAGCAACATTAGCTTTTATGCCAGTTAAAGATAATATTATATT TGCTAAAGAAAAAGCTGGCGTTACTATTGATGTAGTGGAAGAAAAGAATAATTTGTTTAATGAAGAAATTATTTGGGAAC CAGGAAATTTAGAAGAAAGCTCAATAAAAATATCTAATAATTTAAGTGAAGATATAGTTATAAAAACTCTAAATTTTCAT GATGAAAAACTCTTAGACTATGTAAATTCTTCATATATTGATGAGGGGGATGAAAGGTATAAATATTTTTTGGAAAATGC ATTTATTACTGTAAAAGATAGTAGTAATCTGATTTTTCAAGGAACTCTTGAAGAGGTTTTTTCAGAAGGAAATATCAAAT TAAAAGATGGAATAAATGTAGAGTCTAATAATAGTAAACTTATAGATTTAGAAGTAAAGATTTCTAATGACTTAGATAAT AGAGGACAAGGCATACAAAATGCATTTAGTCTAAGTATTCAATATGAATATGAGGATGAAATAAATAATGGAAGTGGAAA CTTACCAAATACAGGGGGCTTTAGCAATAACAATTTTATGGTTTTTGGAGTTCTAGCTTTAGGTATAGGAGCATCAATAT TAAAGTTACCTCAAAAAAAGGAGGAGATTTAA
Upstream 100 bases:
>100_bases ATAAATATGAACTGAGTTATTTTTTTTATAGTTGATGAATATACATATAAAGTTAAATTATATTTATTATGTTAATACTA GTAAGAGGGGGGGAAACAGT
Downstream 100 bases:
>100_bases TATGAAAACCCTTAAGATGAGAAGAATAATTTCATTAGTATTAGCTATAGGGATAACAGGAGGTTTAGGAAGTGTAGCCT ATTTTTCAGATAAAGAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 223
Protein sequence:
>223_residues MRRTKSVFLCTLLATLAFMPVKDNIIFAKEKAGVTIDVVEEKNNLFNEEIIWEPGNLEESSIKISNNLSEDIVIKTLNFH DEKLLDYVNSSYIDEGDERYKYFLENAFITVKDSSNLIFQGTLEEVFSEGNIKLKDGINVESNNSKLIDLEVKISNDLDN RGQGIQNAFSLSIQYEYEDEINNGSGNLPNTGGFSNNNFMVFGVLALGIGASILKLPQKKEEI
Sequences:
>Translated_223_residues MRRTKSVFLCTLLATLAFMPVKDNIIFAKEKAGVTIDVVEEKNNLFNEEIIWEPGNLEESSIKISNNLSEDIVIKTLNFH DEKLLDYVNSSYIDEGDERYKYFLENAFITVKDSSNLIFQGTLEEVFSEGNIKLKDGINVESNNSKLIDLEVKISNDLDN RGQGIQNAFSLSIQYEYEDEINNGSGNLPNTGGFSNNNFMVFGVLALGIGASILKLPQKKEEI >Mature_223_residues MRRTKSVFLCTLLATLAFMPVKDNIIFAKEKAGVTIDVVEEKNNLFNEEIIWEPGNLEESSIKISNNLSEDIVIKTLNFH DEKLLDYVNSSYIDEGDERYKYFLENAFITVKDSSNLIFQGTLEEVFSEGNIKLKDGINVESNNSKLIDLEVKISNDLDN RGQGIQNAFSLSIQYEYEDEINNGSGNLPNTGGFSNNNFMVFGVLALGIGASILKLPQKKEEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25064; Mature: 25064
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: PS50847 GRAM_POS_ANCHORING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRTKSVFLCTLLATLAFMPVKDNIIFAKEKAGVTIDVVEEKNNLFNEEIIWEPGNLEES CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCCCC SIKISNNLSEDIVIKTLNFHDEKLLDYVNSSYIDEGDERYKYFLENAFITVKDSSNLIFQ EEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHEEECEEEEEECCCCEEEE GTLEEVFSEGNIKLKDGINVESNNSKLIDLEVKISNDLDNRGQGIQNAFSLSIQYEYEDE ECHHHHHCCCCEEEECCCCEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCC INNGSGNLPNTGGFSNNNFMVFGVLALGIGASILKLPQKKEEI CCCCCCCCCCCCCCCCCCEEEEEEHHHHCCHHHHHCCCHHCCC >Mature Secondary Structure MRRTKSVFLCTLLATLAFMPVKDNIIFAKEKAGVTIDVVEEKNNLFNEEIIWEPGNLEES CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCCCC SIKISNNLSEDIVIKTLNFHDEKLLDYVNSSYIDEGDERYKYFLENAFITVKDSSNLIFQ EEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHEEECEEEEEECCCCEEEE GTLEEVFSEGNIKLKDGINVESNNSKLIDLEVKISNDLDNRGQGIQNAFSLSIQYEYEDE ECHHHHHCCCCEEEECCCCEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCC INNGSGNLPNTGGFSNNNFMVFGVLALGIGASILKLPQKKEEI CCCCCCCCCCCCCCCCCCEEEEEEHHHHCCHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA