| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ysnB [H]
Identifier: 18311234
GI number: 18311234
Start: 2586002
End: 2586472
Strand: Reverse
Name: ysnB [H]
Synonym: CPE2252
Alternate gene names: 18311234
Gene position: 2586472-2586002 (Counterclockwise)
Preceding gene: 18311235
Following gene: 18311233
Centisome position: 85.32
GC content: 29.3
Gene sequence:
>471_bases ATGAAAGTAGCTATAGTCAGTGATACACATGGAGTTACTCATGTTATTGAATATATAAAAACTTTACTAAATGATTCAGA TGTTCTTATACATTTAGGAGATAATATAAATGATGTTAAGTTATTAAGTGAAGGTTTTAAGGGAAAGGTATATTCTGTTG TAGGAAACTGTGACTATGAAAGAAATGGGCAAGTTGAGCAAGTTATTGAAATTGAAGGCAAAAAATTTCTAATAACTCAT GGTCATAAATATACAGTTAAGTATGGATTAGATAAAATTTACTATAGAGGACTTGAATTAGGGGTAGATGGAGTGATTTT TGGTCATACTCATAGAAAAGTAGCACTAAAAGAAGGAGATATGTGGATAATAAATCCTGGTAGTCCATCAATACCTAAAG ATGGAGAGGCAAGTATAGCTTTTATGAATGTAGATTCTGAAAATATAGAAGTAAGATTTTTTTCTATTTAA
Upstream 100 bases:
>100_bases AAATGACTTCAGATGAAAAGAATGCTATTAGCCATAGGGGAAGAGCTTTAGAAAAACTAAAGGATAATTTAAAAGGGATA CTTAAATAGGAGGAGAAGAA
Downstream 100 bases:
>100_bases TTAGAATTAAATTAAAAAATAAGTGTTAATACATAAAAAAAGCTTATGTATTAGCACTTTTTTTAAAAAGAAAACATAGA TTTTATCAGGGTTTCAGAGG
Product: Ser/Thr protein phosphatase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MKVAIVSDTHGVTHVIEYIKTLLNDSDVLIHLGDNINDVKLLSEGFKGKVYSVVGNCDYERNGQVEQVIEIEGKKFLITH GHKYTVKYGLDKIYYRGLELGVDGVIFGHTHRKVALKEGDMWIINPGSPSIPKDGEASIAFMNVDSENIEVRFFSI
Sequences:
>Translated_156_residues MKVAIVSDTHGVTHVIEYIKTLLNDSDVLIHLGDNINDVKLLSEGFKGKVYSVVGNCDYERNGQVEQVIEIEGKKFLITH GHKYTVKYGLDKIYYRGLELGVDGVIFGHTHRKVALKEGDMWIINPGSPSIPKDGEASIAFMNVDSENIEVRFFSI >Mature_156_residues MKVAIVSDTHGVTHVIEYIKTLLNDSDVLIHLGDNINDVKLLSEGFKGKVYSVVGNCDYERNGQVEQVIEIEGKKFLITH GHKYTVKYGLDKIYYRGLELGVDGVIFGHTHRKVALKEGDMWIINPGSPSIPKDGEASIAFMNVDSENIEVRFFSI
Specific function: Unknown
COG id: COG0622
COG function: function code R; Predicted phosphoesterase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallophosphoesterase superfamily. YfcE family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 - InterPro: IPR020935 - InterPro: IPR000979 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: NA
Molecular weight: Translated: 17452; Mature: 17452
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS50817 INTEIN_N_TER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVAIVSDTHGVTHVIEYIKTLLNDSDVLIHLGDNINDVKLLSEGFKGKVYSVVGNCDYE CEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCEEEEEEECCCCC RNGQVEQVIEIEGKKFLITHGHKYTVKYGLDKIYYRGLELGVDGVIFGHTHRKVALKEGD CCCCEEEEEEECCCEEEEECCCEEEEEECCCCCEECCEEECCCEEEEECCCEEEEEECCC MWIINPGSPSIPKDGEASIAFMNVDSENIEVRFFSI EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEEC >Mature Secondary Structure MKVAIVSDTHGVTHVIEYIKTLLNDSDVLIHLGDNINDVKLLSEGFKGKVYSVVGNCDYE CEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCEEEEEEECCCCC RNGQVEQVIEIEGKKFLITHGHKYTVKYGLDKIYYRGLELGVDGVIFGHTHRKVALKEGD CCCCEEEEEEECCCEEEEECCCEEEEEECCCCCEECCEEECCCEEEEECCCEEEEEECCC MWIINPGSPSIPKDGEASIAFMNVDSENIEVRFFSI EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]