| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311203
Identifier: 18311203
GI number: 18311203
Start: 2543496
End: 2544179
Strand: Reverse
Name: 18311203
Synonym: CPE2221
Alternate gene names: NA
Gene position: 2544179-2543496 (Counterclockwise)
Preceding gene: 18311204
Following gene: 18311202
Centisome position: 83.93
GC content: 24.27
Gene sequence:
>684_bases TTGAGTGAAAAATTAGAATTGTTTTTAAGAGAAAATAATATAGAGGTATTACCTAGAAAAGAAATAGAAAGAGAAAAAAG AGAATTAAGATTTTATGATCCATTAGAGTATTTAAATACACTAAGTGAGATTCACAAGGAATTTTTAAAAGAGGAAAATA GGATAAAATTTAAATTTAGAAATGATATATGGAAACAGGTTCAAATTTTTAAACTTTGGAGTAGAAGAGTAGAGAGATTA GAAGACAGTAATGGATTGATTAATAAGGCCTTAGATGCATCAAAAAAAAGCTTAGACTGCATTTATAATATTAATTATAA AGAGCTTATAAGAAGAGCTATGGAAAGGGAAGAAGTATGTATTGGTAGGATATATTATGAAGTTAAGAATGGGGAGAAAA GGATTTTTATAAAAAATACAGAGGATATAAAATTTAATATGGTGGAAGAGGATTATTATAACTATTTAAAAAAGATAAGA GGAAACTATAAGGATGAATTAAAGGATTTACTTCTTGAAGTAGTAGAGAAAGAAAGCTTAGATTTTAAAAGTTATGTTTA TATAAACTCATTGATTCAGTATCCATATAATTCAATGAGGTATTTGCAAAATAATTATATAAAGGATTTAAAGATTAAAA GTAATGAATTAGAAGAATTATTACTTAAAGATTATCTTATATAG
Upstream 100 bases:
>100_bases GAACATTTTTTAAAGAAACTAGGTAAATACGAAAAAGATAGAGAGTTTAGACAGAACTTTGTTGATGAATTAAGCAATTT TACTTTGAGGTGATTTAAAT
Downstream 100 bases:
>100_bases TAGGGGGAGAGGTTTATGAATAAGATTAGATATAAAGATGAGAAATATTTATGTAGATATGATTTAGATATTAAATTATT TGAAGCTTTAGGACTAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MSEKLELFLRENNIEVLPRKEIEREKRELRFYDPLEYLNTLSEIHKEFLKEENRIKFKFRNDIWKQVQIFKLWSRRVERL EDSNGLINKALDASKKSLDCIYNINYKELIRRAMEREEVCIGRIYYEVKNGEKRIFIKNTEDIKFNMVEEDYYNYLKKIR GNYKDELKDLLLEVVEKESLDFKSYVYINSLIQYPYNSMRYLQNNYIKDLKIKSNELEELLLKDYLI
Sequences:
>Translated_227_residues MSEKLELFLRENNIEVLPRKEIEREKRELRFYDPLEYLNTLSEIHKEFLKEENRIKFKFRNDIWKQVQIFKLWSRRVERL EDSNGLINKALDASKKSLDCIYNINYKELIRRAMEREEVCIGRIYYEVKNGEKRIFIKNTEDIKFNMVEEDYYNYLKKIR GNYKDELKDLLLEVVEKESLDFKSYVYINSLIQYPYNSMRYLQNNYIKDLKIKSNELEELLLKDYLI >Mature_226_residues SEKLELFLRENNIEVLPRKEIEREKRELRFYDPLEYLNTLSEIHKEFLKEENRIKFKFRNDIWKQVQIFKLWSRRVERLE DSNGLINKALDASKKSLDCIYNINYKELIRRAMEREEVCIGRIYYEVKNGEKRIFIKNTEDIKFNMVEEDYYNYLKKIRG NYKDELKDLLLEVVEKESLDFKSYVYINSLIQYPYNSMRYLQNNYIKDLKIKSNELEELLLKDYLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27981; Mature: 27849
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKLELFLRENNIEVLPRKEIEREKRELRFYDPLEYLNTLSEIHKEFLKEENRIKFKFR CCCHHEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEH NDIWKQVQIFKLWSRRVERLEDSNGLINKALDASKKSLDCIYNINYKELIRRAMEREEVC HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHH IGRIYYEVKNGEKRIFIKNTEDIKFNMVEEDYYNYLKKIRGNYKDELKDLLLEVVEKESL HHHHEEEEECCCEEEEEECCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC DFKSYVYINSLIQYPYNSMRYLQNNYIKDLKIKSNELEELLLKDYLI CHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SEKLELFLRENNIEVLPRKEIEREKRELRFYDPLEYLNTLSEIHKEFLKEENRIKFKFR CCHHEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEH NDIWKQVQIFKLWSRRVERLEDSNGLINKALDASKKSLDCIYNINYKELIRRAMEREEVC HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHH IGRIYYEVKNGEKRIFIKNTEDIKFNMVEEDYYNYLKKIRGNYKDELKDLLLEVVEKESL HHHHEEEEECCCEEEEEECCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC DFKSYVYINSLIQYPYNSMRYLQNNYIKDLKIKSNELEELLLKDYLI CHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA