| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is cotS [H]
Identifier: 18311202
GI number: 18311202
Start: 2542452
End: 2543480
Strand: Reverse
Name: cotS [H]
Synonym: CPE2220
Alternate gene names: 18311202
Gene position: 2543480-2542452 (Counterclockwise)
Preceding gene: 18311203
Following gene: 18311200
Centisome position: 83.9
GC content: 22.84
Gene sequence:
>1029_bases ATGAATAAGATTAGATATAAAGATGAGAAATATTTATGTAGATATGATTTAGATATTAAATTATTTGAAGCTTTAGGACT AGATATATTTGATTTAAGACCAAATAGAAATGTATTTTTATTAGATACAAAGCAAGGTAAGAAGATTTTAAAGATGATAA ATTATGATGATGACAGATTAAACTTCATAATCCATTCAACAGAGTACTTAAGGGAAAGATATGATGGTATATTAAAAATA AATAAGCTTCCAAATGGAGAGTGGAGATTCAAATGGAAAGGAAATTATTATATATTATTAGATTACTTTGAAGGAACTGA ATTTAATATAGCTAATCCAATCGAATTAGAAATAATAACAGATGCAGTAGCTAAACTTCATAATGCAGGAATGGGAATTC AAGAGGCTACTTCAAAGGAAATGAATGAAAAAAATAGTGAGCTTTTTAAGTTAAAAGATTATTTTAAAAATAGTAAAAAA GATTTAGAAAAACTAAAGGAAATAGTGGGAAGCTATAAGTATAAAAATGAATTTGATGAAATCTTTATAAAAGAAGTAGA TTATCATTTAAGTGATGTAGAGAAGTGTATAGATTTATTAGAAAAGAGTAAATATGATGACTTATGTAGAGATAAAGAAA AAATAACTTTATGCCATAATGATCTTGCCTATCATAATATATTATTTAATCAAAATAAGGTAAGCTTTATAGACTTTGAT TATTGCAATATAAATTTAAGGGTAATAGACTTATGTAATTTTATAATTAAGAGTATAAAAAGATTTGGATTTAGTTTAGA AATGTATGATTCTATTATAGAAAAGTATGATAAGTTAAACAACTTATCAAAGGAAGAAAAAGAGTTAATGTATATATATT TAAGATTTCCTCATGATTTTTATACTGTTTCAATGCAATATTATTATAAATTAAAGGATTGGAAATATGAGTCCTTCTTA AATAAATTAGAAAGGAAATTAGAATATACAAAGGAAAAGGAAATTTTATTAAATCATATAAATAACTAA
Upstream 100 bases:
>100_bases GTATTTGCAAAATAATTATATAAAGGATTTAAAGATTAAAAGTAATGAATTAGAAGAATTATTACTTAAAGATTATCTTA TATAGTAGGGGGAGAGGTTT
Downstream 100 bases:
>100_bases TAAAACTAAGTAAAAGGTACCGTATAAAATAACTAATAAAACTTATAAATTGATTCTTAGAAGTAAGAAATTCTATTAAA GTTTATAAGTTTTATGTTTA
Product: spore coat protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MNKIRYKDEKYLCRYDLDIKLFEALGLDIFDLRPNRNVFLLDTKQGKKILKMINYDDDRLNFIIHSTEYLRERYDGILKI NKLPNGEWRFKWKGNYYILLDYFEGTEFNIANPIELEIITDAVAKLHNAGMGIQEATSKEMNEKNSELFKLKDYFKNSKK DLEKLKEIVGSYKYKNEFDEIFIKEVDYHLSDVEKCIDLLEKSKYDDLCRDKEKITLCHNDLAYHNILFNQNKVSFIDFD YCNINLRVIDLCNFIIKSIKRFGFSLEMYDSIIEKYDKLNNLSKEEKELMYIYLRFPHDFYTVSMQYYYKLKDWKYESFL NKLERKLEYTKEKEILLNHINN
Sequences:
>Translated_342_residues MNKIRYKDEKYLCRYDLDIKLFEALGLDIFDLRPNRNVFLLDTKQGKKILKMINYDDDRLNFIIHSTEYLRERYDGILKI NKLPNGEWRFKWKGNYYILLDYFEGTEFNIANPIELEIITDAVAKLHNAGMGIQEATSKEMNEKNSELFKLKDYFKNSKK DLEKLKEIVGSYKYKNEFDEIFIKEVDYHLSDVEKCIDLLEKSKYDDLCRDKEKITLCHNDLAYHNILFNQNKVSFIDFD YCNINLRVIDLCNFIIKSIKRFGFSLEMYDSIIEKYDKLNNLSKEEKELMYIYLRFPHDFYTVSMQYYYKLKDWKYESFL NKLERKLEYTKEKEILLNHINN >Mature_342_residues MNKIRYKDEKYLCRYDLDIKLFEALGLDIFDLRPNRNVFLLDTKQGKKILKMINYDDDRLNFIIHSTEYLRERYDGILKI NKLPNGEWRFKWKGNYYILLDYFEGTEFNIANPIELEIITDAVAKLHNAGMGIQEATSKEMNEKNSELFKLKDYFKNSKK DLEKLKEIVGSYKYKNEFDEIFIKEVDYHLSDVEKCIDLLEKSKYDDLCRDKEKITLCHNDLAYHNILFNQNKVSFIDFD YCNINLRVIDLCNFIIKSIKRFGFSLEMYDSIIEKYDKLNNLSKEEKELMYIYLRFPHDFYTVSMQYYYKLKDWKYESFL NKLERKLEYTKEKEILLNHINN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Spore wall, spore coat [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CotS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002575 - InterPro: IPR011009 - InterPro: IPR014255 [H]
Pfam domain/function: PF01636 APH [H]
EC number: NA
Molecular weight: Translated: 41516; Mature: 41516
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: PS00109 PROTEIN_KINASE_TYR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKIRYKDEKYLCRYDLDIKLFEALGLDIFDLRPNRNVFLLDTKQGKKILKMINYDDDRL CCCCCCCCCCEEEEECCCCHHHHHHCCEEEEECCCCCEEEEECCCCHHHHHHHCCCCCCE NFIIHSTEYLRERYDGILKINKLPNGEWRFKWKGNYYILLDYFEGTEFNIANPIELEIIT EEEEECHHHHHHHCCCEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEHHH DAVAKLHNAGMGIQEATSKEMNEKNSELFKLKDYFKNSKKDLEKLKEIVGSYKYKNEFDE HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCHHHH IFIKEVDYHLSDVEKCIDLLEKSKYDDLCRDKEKITLCHNDLAYHNILFNQNKVSFIDFD HHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCHHHHHEEECCCCEEEEEEE YCNINLRVIDLCNFIIKSIKRFGFSLEMYDSIIEKYDKLNNLSKEEKELMYIYLRFPHDF EEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCE YTVSMQYYYKLKDWKYESFLNKLERKLEYTKEKEILLNHINN EEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNKIRYKDEKYLCRYDLDIKLFEALGLDIFDLRPNRNVFLLDTKQGKKILKMINYDDDRL CCCCCCCCCCEEEEECCCCHHHHHHCCEEEEECCCCCEEEEECCCCHHHHHHHCCCCCCE NFIIHSTEYLRERYDGILKINKLPNGEWRFKWKGNYYILLDYFEGTEFNIANPIELEIIT EEEEECHHHHHHHCCCEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEHHH DAVAKLHNAGMGIQEATSKEMNEKNSELFKLKDYFKNSKKDLEKLKEIVGSYKYKNEFDE HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCHHHH IFIKEVDYHLSDVEKCIDLLEKSKYDDLCRDKEKITLCHNDLAYHNILFNQNKVSFIDFD HHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCHHHHHEEECCCCEEEEEEE YCNINLRVIDLCNFIIKSIKRFGFSLEMYDSIIEKYDKLNNLSKEEKELMYIYLRFPHDF EEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCE YTVSMQYYYKLKDWKYESFLNKLERKLEYTKEKEILLNHINN EEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7545510; 9387221; 9384377 [H]