Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is spoIIR [H]

Identifier: 18311193

GI number: 18311193

Start: 2531379

End: 2532008

Strand: Reverse

Name: spoIIR [H]

Synonym: CPE2211

Alternate gene names: 18311193

Gene position: 2532008-2531379 (Counterclockwise)

Preceding gene: 18311194

Following gene: 18311192

Centisome position: 83.53

GC content: 26.51

Gene sequence:

>630_bases
ATGAAAAAAATATTATCAGTTTTATTTTTAGGAGTTATATGTTTATTTATAGTAGGAAGTTCTTTAAATACTAGACAAGC
TTTAGGTGTTACAGAGGAAAATGTTGTTGAGGATATAAGTGAAAAATTAATAAGATTTCATGTTTTAGCCAATAGTGATA
GTGATGTAGATCAAGACTTAAAACTTAGAGTTAAAGATGAGGTATTAAAATATATTTCACCTATATTAAATGAATCACAA
AGTTTAGAGGAATCTAGAGAAATATTAAAAAGAGAAGATAAAAACATTATAAAAATAGCTGAAGATTATATTAAATCACA
GGGATTTGATTATACTGTTGAAACAACATTAACAAGAGAAAATTTTCCTGTTAAAGAATATGGCAATATAGTTTTACCAC
AAGGAGAATATGAGGCTTATAGAATACTAATTGGCGAAGGAAAAGGTCAAAATTGGTGGTGTGTTATGTTTCCACCTTTA
TGCTTCATAGATGTTACTAAGGGACAAGTTGCCTATGATGAAACAGAGAAAAAGATGAAGGATGTATTATCAGAAGAAGA
ATTTAAGAGTGTTAATAAAAAGGAAAATAACGTAAATTTTGAATTTAAGGTAATTGATTTATTTAAATAA

Upstream 100 bases:

>100_bases
AACAAGAACTATAAATAGCAATAATTTATAAAAAAATATTTTTTTATTGTATATAAAAAATACTCCTTGGTAATAATCAA
GGTATCAGGGGGTGTTTGTT

Downstream 100 bases:

>100_bases
AAGAATTAACATATGATAATAAAGTGATTTTTAGGAGGAAAAAATATGACTAGAGCATTAGCCATGGTTTCAGGTGGATT
AGATAGTATATTAGCTGCAA

Product: stage II sporulation protein R

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDLKLRVKDEVLKYISPILNESQ
SLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRENFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPL
CFIDVTKGQVAYDETEKKMKDVLSEEEFKSVNKKENNVNFEFKVIDLFK

Sequences:

>Translated_209_residues
MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDLKLRVKDEVLKYISPILNESQ
SLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRENFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPL
CFIDVTKGQVAYDETEKKMKDVLSEEEFKSVNKKENNVNFEFKVIDLFK
>Mature_209_residues
MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDLKLRVKDEVLKYISPILNESQ
SLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRENFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPL
CFIDVTKGQVAYDETEKKMKDVLSEEEFKSVNKKENNVNFEFKVIDLFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014202 [H]

Pfam domain/function: PF09551 Spore_II_R [H]

EC number: NA

Molecular weight: Translated: 24160; Mature: 24160

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDL
CHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHH
KLRVKDEVLKYISPILNESQSLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECC
NFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPLCFIDVTKGQVAYDETEKKMK
CCCHHHHCCEECCCCCCEEEEEEEECCCCCCEEEEEECCEEEEECCCCCEEHHHHHHHHH
DVLSEEEFKSVNKKENNVNFEFKVIDLFK
HHHCHHHHHHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDL
CHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHH
KLRVKDEVLKYISPILNESQSLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECC
NFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPLCFIDVTKGQVAYDETEKKMK
CCCHHHHCCEECCCCCCEEEEEEEECCCCCCEEEEEECCEEEEECCCCCEEHHHHHHHHH
DVLSEEEFKSVNKKENNVNFEFKVIDLFK
HHHCHHHHHHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]