| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311191
Identifier: 18311191
GI number: 18311191
Start: 2529911
End: 2530330
Strand: Reverse
Name: 18311191
Synonym: CPE2209
Alternate gene names: NA
Gene position: 2530330-2529911 (Counterclockwise)
Preceding gene: 18311192
Following gene: 18311190
Centisome position: 83.47
GC content: 29.05
Gene sequence:
>420_bases ATGAGTAAAAAAGCTATAATATCAATATGTAGCACTCAAGATATTGGAGAAAAAGAAAAAATAGAAGTTGTAACTGTTGG AGAATTTTCTATTAATGGAGATGAATTTATAGCTACTTATGATGAAACTGAAATATCAGGAATGGAAGGAACAAAAACAA CTCTAAAAATAAAGGGCGATAAAGTTGTATTACATAGAGAAGGAACAACTAGTACAAAGATGGAATTCCAAAAGGATAAT ACACAAGTGGCTCTTTATAATACTCCTTATGGAATGTTAGAGCTTAAGACATCAACAAAAGAGTTAGATTTAGATGTTAA TGAAAAGGGAGGAAACATCTCTATAAAATATCATCTAATAGCTGGTGGACAAGAACCTATAAAAACAAATCTTGATATGA AAATAAAAGTAGAAGATTAA
Upstream 100 bases:
>100_bases AAAAATGGAGAGATTAATACAATAACAATAACTCCATTTAAAGATGAAGAACTTAAAAAATATATGATAAATCAATAATT GATTTAGAAAGGATATTATT
Downstream 100 bases:
>100_bases TCTTCAAATAAAAAATAAGGCTATACCAAAAGGGGTAGCCTTATTTTTATAAATTATTTATTTTTAAAATAAAAAAAGTT GAAACTAATTTCAACTTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MSKKAIISICSTQDIGEKEKIEVVTVGEFSINGDEFIATYDETEISGMEGTKTTLKIKGDKVVLHREGTTSTKMEFQKDN TQVALYNTPYGMLELKTSTKELDLDVNEKGGNISIKYHLIAGGQEPIKTNLDMKIKVED
Sequences:
>Translated_139_residues MSKKAIISICSTQDIGEKEKIEVVTVGEFSINGDEFIATYDETEISGMEGTKTTLKIKGDKVVLHREGTTSTKMEFQKDN TQVALYNTPYGMLELKTSTKELDLDVNEKGGNISIKYHLIAGGQEPIKTNLDMKIKVED >Mature_138_residues SKKAIISICSTQDIGEKEKIEVVTVGEFSINGDEFIATYDETEISGMEGTKTTLKIKGDKVVLHREGTTSTKMEFQKDNT QVALYNTPYGMLELKTSTKELDLDVNEKGGNISIKYHLIAGGQEPIKTNLDMKIKVED
Specific function: Unknown
COG id: COG4506
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15423; Mature: 15292
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKAIISICSTQDIGEKEKIEVVTVGEFSINGDEFIATYDETEISGMEGTKTTLKIKGD CCCCEEEEEECCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCEECCCCCCEEEEEECCC KVVLHREGTTSTKMEFQKDNTQVALYNTPYGMLELKTSTKELDLDVNEKGGNISIKYHLI EEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEECCCEEEEEEECCCCCEEEEEEEEE AGGQEPIKTNLDMKIKVED ECCCCCCCCCCEEEEEECC >Mature Secondary Structure SKKAIISICSTQDIGEKEKIEVVTVGEFSINGDEFIATYDETEISGMEGTKTTLKIKGD CCCEEEEEECCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCEECCCCCCEEEEEECCC KVVLHREGTTSTKMEFQKDNTQVALYNTPYGMLELKTSTKELDLDVNEKGGNISIKYHLI EEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEECCCEEEEEEECCCCCEEEEEEEEE AGGQEPIKTNLDMKIKVED ECCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA