Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18309906

Identifier: 18309906

GI number: 18309906

Start: 1123136

End: 1123966

Strand: Direct

Name: 18309906

Synonym: CPE0924

Alternate gene names: NA

Gene position: 1123136-1123966 (Clockwise)

Preceding gene: 18309905

Following gene: 18309907

Centisome position: 37.05

GC content: 26.35

Gene sequence:

>831_bases
GTGAGTAAATTGAGAATAACTACATTAGTAGAAAACACAAAAATATCAGATGAATATGAAAATAAGCATGGCTTATCATT
TCATATAGAAACAGAAAAACATAATATACTTTTTGATTTAGGACCCAAAAATACATTTTTGACAAATGCAAAGAAGTTAA
ATATAAACTTAGAAGAAGTTGATATTGTAGTAATATCTCATGGTCATAATGATCATGGTGGTGGGTTAGAAGAATTTTTA
AAAATAAATAATAAAGCTAAGGTTTATATACACAAGGATGCTTTTAATGAGTATTATAGTATGGCAGGAATTTTCAAAAA
GTATATAGGATTAGATAAAGAATTAAAGGCAAATCCAAGAATAATATTGACAGAGGGAGATATGAAAATAGATGATGAGT
TATATTTATTTTCAGTAGTAGAAAATAGACATAAAGTATCTAAATTTAATAAGGTCCTTTATAAAAGAGTAGATGGTATG
TACTTAGAAGATGATTTTGTACATGAACAAAGTCTTATAATAACAGAAGATAATAAGAATGTACTAATGGGTGGTTGTGC
TCATAATGACATAAGAAATATAATTGATAAGGCAGAGGTTATAATAGGAAAAGACTTAGACTACGTTATAAGTGGTTTCC
ATATTTTTAATCCTAGCACAGGAATAAGTGAAAGTGATTTATTCATAAATACTTTAGGAGATAACTTAAATAAAAGAAAT
ACTAAGTTTTATACTTGTCACTGCACAGGAATGAGAGCATTTAAAATGCTAGAGGAAAAGTTACAAGATAAAATAGAATA
TATTTCTACTGGACAAGTTTTAAATATATAA

Upstream 100 bases:

>100_bases
TTTCTAAGAATATAAGCTTATTACCATTATAATGTTTTTAATATTTTTATAGTTTATTTTAGTTGTTTTTAGTATAAAGG
CAGTTTGAGATACAAGAGGA

Downstream 100 bases:

>100_bases
AATACAAGGGATTGTATCAAAATAACTTATAAATTTTAATATAAGTATTTGATATAATCCCTTGTCTATTTATTGTATAA
ATTTTCTTATCATGGTACAA

Product: metallo-beta-lactamase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEVDIVVISHGHNDHGGGLEEFL
KINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPRIILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGM
YLEDDFVHEQSLIITEDNKNVLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN
TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI

Sequences:

>Translated_276_residues
MSKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEVDIVVISHGHNDHGGGLEEFL
KINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPRIILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGM
YLEDDFVHEQSLIITEDNKNVLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN
TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI
>Mature_275_residues
SKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEVDIVVISHGHNDHGGGLEEFLK
INNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPRIILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGMY
LEDDFVHEQSLIITEDNKNVLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRNT
KFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI

Specific function: Catalyzes the condensation of 6-hydroxymethyl-7,8- dihydropterin pyrophosphate (DHPP) with 4-(beta-D-ribofuranosyl)- aminobenzene-5'-phosphate (beta-RFA-P) to form 7,8-dihydropterin- 6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate, a precursor

COG id: COG1237

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 31727; Mature: 31596

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEV
CCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEECCEEEEEEEHEE
DIVVISHGHNDHGGGLEEFLKINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPR
EEEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
IILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGMYLEDDFVHEQSLIITEDNKN
EEEEECCCEECCCEEEEEEHHCHHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEECCCE
VLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN
EEEECCCHHHHHHHHHHHHEEECCCHHHHEECEEEECCCCCCCCCCEEEEECCCCCCCCC
TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI
CEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure 
SKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEV
CCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEECCEEEEEEEHEE
DIVVISHGHNDHGGGLEEFLKINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPR
EEEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
IILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGMYLEDDFVHEQSLIITEDNKN
EEEEECCCEECCCEEEEEEHHCHHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEECCCE
VLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN
EEEECCCHHHHHHHHHHHHEEECCCHHHHEECEEEECCCCCCCCCCEEEEECCCCCCCCC
TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI
CEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]