Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is gyrA [H]
Identifier: 182682554
GI number: 182682554
Start: 2289074
End: 2291755
Strand: Reverse
Name: gyrA [H]
Synonym: XfasM23_2042
Alternate gene names: 182682554
Gene position: 2291755-2289074 (Counterclockwise)
Preceding gene: 182682555
Following gene: 182682553
Centisome position: 90.38
GC content: 55.67
Gene sequence:
>2682_bases ATGGCAGAGACCGCCAAGGAAATCATCAAGGTCAATCTGGAAGACGAGATGCGTAAGAGCTACCTTGATTATGCGATGAG CGTAATCGTAGGTCGTGCACTCCCCGATGCTCGCGATGGCATGAAGCCTGTGCATCGCCGCGTCCTGTACGCCATGCATG AACTTGGTGCTCACAGCGACAAGTCCTACTTCAAATCTGCACGTATCATCGGTGAAGTTCTCGGTAAGTACCATCCGCAT GGTGATCAGTCTGTTTACGACACCCTGGTACGTATGGCGCAACCCTTCTCGTTGCGTTACTTACTGGTAGAGGGTCAAGG TAACTTTGGTTCGGTGGACGGCGATCCTGCCGCCGCGATGCGTTACACCGAGTCGCGCATGTCGCGGATCAGCCACGACC TGATTGCTGACATCGATAAAGAGACCGTCGACTTCCAGCCCAATTACGACGAAAAAGAAACGGAACCAACGGTCATGCCG ACCCGGTTCCCGAATCTATTGGTCAATGGATCGTCCGGGATTGCAGTGGGCATGGCCACCAATATCCCGCCCCATAACCT TGTCGAATCCATCAACGCTTGCATTGCCCTTATTGATAATCCAGAACTGGATATTGATGGATTGATGGAATACATCCCCG GTCCGGATTTCCCCACCGCCGGTATCATCAACGGCACCGCTGGCATTGTTGCTGGCTACCGTACCGGCCGTGGTCGCGTC CGCATGCGTGCCAAGGCGGATATTGAAGTTGCCGACAATGGTCGTGAAGCCATCGTTGTTACTGAGATTCCTTACCAAGT CAACAAAGCACGTTTGATCGAAAAAATTGCCGAGCTGGTGAAGGAAAAGAGAATCGATGGCATCAGCGAACTGCGTGACG AGTCCGACAAGGACGGCATGCGGATTTATATTGAAGTCAAACGTGGCGAGTCTGCCGAGGTTGTCCTCAACAACCTCTAC CAGCAGACCCAGATGGAGTCGGTATTCGGAATTAACATGGTGGCACTGGTTGACGGCCGCCCCCAACTACTCAACCTCAA ACAGATACTGCAAGCCTTCATCCGTCACCGCCGCGAAGTGGTCACCCGTCGCACCATCTTCGAACTGCGCAAAGCCCGTG CCCGTGCCCACGTCCTGGAAGGTTTGACGGTTGCCCTGGCCAACATTGACGAGATGATTCACCTGATCAAAACCTCGCCA AGCCCACAAGAAGCAAAAGAGCGCCTGCTCGCCAAAACCTGGGCACCTGGATTGGTCGGCACATTGCTCAGTGCCTCAGG TGGTGAAGCATCGCGCCCGGAAGATCTCCCCCAAGGCGTGGGGCTGATTGGCGACTCCTATCAATTGACTGAAGTCCAAG TACGACAGATTTTGGAAATGCGCCTGCACCGCCTCACCGGGCTGGAACAGGACAAGCTTGCCGAAGAGTACCAGCAGCTG CTGGAGATCATTGTCGGCCTGATCCGCATCTTGGAGAGCCCGGATGTCCTATTACAGGTCATTCGCGATGAACTGCTCAA GATACGTGAAGAATATGGGGATGTACGCCGTACCGAGATCCGCCATAGCGAAGAAGACTTAGACATCCTCGACCTCATTG CACCAGAGGATGTCGTCGTCACCCTGTCCCACGCCGGCTATGCCAAGCGTCAGCCCGTGTCAGCCTACCGTGCCCAAAAG CGGGGAGGGCGTGGCCGCGCTGCTGTGACCACAAAAGAAGAAGACTTCATTGACCATCTCTGGCTGGTCAACACCCACGA CACCCTGTTGACCTTCACCAGCACCGGCAAAGTATTTTGGCTGTCGGTGTACCAATTGCCAGAGGCCGGTTCCAACGCCC GCGGTCGCCCCATCATCAACTGGATCCCCTTGGAGCCAGGCGAAAAAGTGCAGGCCGTCCTTCCCGTACGCGAATACGCT GAGAACCACTATGTGTTTTTTGCCACCCGCCAAGGGACCGTCAAAAAGACTCCCTTGAGTGAATTTGCATTCCGCTTAGC GCGCGGCAAAATCGCGATCAACCTTGATCAAGGAGATGCCCTGATTGGTGTTGCCCTGACCGATGGCGAACGTGATGTCC TGCTCTTTGCCTCCAATGGCAAGACCGTGCGTTTCAGTGAGAACACTGTCCGCTCAATGGGCCGCACCGCCACGGGCGTG CGCGGTATCAAACTGACCGAAGGAGAAGAGGTGGTCAGCCTCATCATTGCCGAACCGGCAACTGGCGTGGATATGCTCGA AGAAGCGGAAGAAACCGCAGACGACGACATCCAGACAGCCAACACTGCCGAGAGCGTGCACATTGATCCCACCCAGGATG ACATCCTCTGCATCCTGACCGCCACTGAAAACGGCTACGGCAAATGCACCCCCCTGGCCCATTACCCTCGTAAAGGCCGT GGCACTCAAGGCGTCATTGGTATCCAGACCACCGAGCGCAATGGCCGCCTGGTTGCTGCCGTCCTATTAGGTGCCACCGA CGAAGTCCTCTTGATCTCTGATGGCGGCACCCTGGTGCGTACCCGTGGCTCCGAGATTTCGCGCGTTGGCCGTAATACCC AAGGCGTCACCCTAATCCGCTTATCCAATGGTGAAAAACTTCAGGCAGTCGAGCGTTTGGATGCTTCCTTGAGTATCCCG GATGAGACAGAGGACGATCCCGGCACCGTACACCCTGCCTGA
Upstream 100 bases:
>100_bases TAAAATCACCGGATTAAATTGAACCCTGGCCATCTTTGTTCGGCAGCCCATCCCATGGTTGCTTGTGAACTTGTGCGCCG CTTTACATGACGGGACCCGA
Downstream 100 bases:
>100_bases ACAGGCAACATCCGTCCGGATCTGAATTAAATTCCCATTAAAAGCCCATGAGGACATGGCACACTCGCCATGTCCCATCT CCTGAACCTCTGCGACTCAC
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 893; Mature: 892
Protein sequence:
>893_residues MAETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARIIGEVLGKYHPH GDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMP TRFPNLLVNGSSGIAVGMATNIPPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRV RMRAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRGESAEVVLNNLY QQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVTRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSP SPQEAKERLLAKTWAPGLVGTLLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQL LEIIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTLSHAGYAKRQPVSAYRAQK RGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA ENHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGV RGIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGR GTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLSIP DETEDDPGTVHPA
Sequences:
>Translated_893_residues MAETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARIIGEVLGKYHPH GDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMP TRFPNLLVNGSSGIAVGMATNIPPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRV RMRAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRGESAEVVLNNLY QQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVTRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSP SPQEAKERLLAKTWAPGLVGTLLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQL LEIIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTLSHAGYAKRQPVSAYRAQK RGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA ENHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGV RGIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGR GTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLSIP DETEDDPGTVHPA >Mature_892_residues AETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARIIGEVLGKYHPHG DQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPT RFPNLLVNGSSGIAVGMATNIPPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVR MRAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRGESAEVVLNNLYQ QTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVTRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPS PQEAKERLLAKTWAPGLVGTLLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLL EIIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTLSHAGYAKRQPVSAYRAQKR GGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAE NHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVR GIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRG TQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLSIPD ETEDDPGTVHPA
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=317, Percent_Identity=25.5520504731861, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI19913406, Length=201, Percent_Identity=29.8507462686567, Blast_Score=76, Evalue=2e-13, Organism=Escherichia coli, GI1788562, Length=874, Percent_Identity=60.4118993135012, Blast_Score=1047, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=755, Percent_Identity=35.2317880794702, Blast_Score=393, Evalue=1e-110, Organism=Caenorhabditis elegans, GI17535065, Length=384, Percent_Identity=26.3020833333333, Blast_Score=80, Evalue=5e-15, Organism=Caenorhabditis elegans, GI212645657, Length=413, Percent_Identity=24.6973365617433, Blast_Score=76, Evalue=7e-14, Organism=Caenorhabditis elegans, GI212645845, Length=374, Percent_Identity=24.5989304812834, Blast_Score=73, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115534553, Length=171, Percent_Identity=32.7485380116959, Blast_Score=71, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=341, Percent_Identity=26.3929618768328, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI17136538, Length=370, Percent_Identity=25.1351351351351, Blast_Score=79, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 98755; Mature: 98624
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSD CCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCCC KSYFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAM HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHH RYTESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMAT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEC NIPPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRV CCCHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCEE RMRAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGM EEEEECCEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCE RIYIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREV EEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEECHHHHHHHHHHHHHHH VTRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH TLLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQL HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LEIIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEECCCCCCEEE TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW EEECCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHEEEEECCCEEEEEECCCCEEE LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLS EEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHHCCCCEEEEEECCCCCCCCCHH EFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGV HHHHHHHCCCEEEEECCCCEEEEEEEECCCCEEEEEECCCCEEEECHHHHHHCCCCCCCC RGIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILT CCEEECCCHHEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEE ATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVR ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEE TRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLSIPDETEDDPGTVHPA ECCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSD CCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCCC KSYFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAM HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHH RYTESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMAT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEC NIPPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRV CCCHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCEE RMRAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGM EEEEECCEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCE RIYIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREV EEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEECHHHHHHHHHHHHHHH VTRRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH TLLSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQL HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LEIIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEECCCCCCEEE TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW EEECCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHEEEEECCCEEEEEECCCCEEE LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLS EEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHHCCCCEEEEEECCCCCCCCCHH EFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGV HHHHHHHCCCEEEEECCCCEEEEEEEECCCCEEEEEECCCCEEEECHHHHHHCCCCCCCC RGIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILT CCEEECCCHHEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEE ATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVR ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEE TRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLSIPDETEDDPGTVHPA ECCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7811002; 10984043 [H]