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The map label for this gene is rimN [H]

Identifier: 182682384

GI number: 182682384

Start: 2076613

End: 2077242

Strand: Direct

Name: rimN [H]

Synonym: XfasM23_1870

Alternate gene names: 182682384

Gene position: 2076613-2077242 (Clockwise)

Preceding gene: 182682383

Following gene: 182682387

Centisome position: 81.9

GC content: 55.71

Gene sequence:

>630_bases
ATGCCTCTCACTATTCACACAGACAGCAATCAAAGATCATGGCAACTCAGTGCAGCTGAAAACAGTATGGCAACAACACT
CACCCTCAGCGAAGCCGTCACCGCACTACAACAAGGCGACGTGATCGCCTATCCCACTGAAGCAGTGTGGGGGCTGGGCT
GCGATCCACGTCAGGAAACGGCAGTACATACTCTACTCAATATCAAGCAACGTGCATCAGGGAAAGGATTGATCCTGGTC
ACGGCCGAACTCAATACACTACAAGATTGGCTAGATCTGGACACGCTATCACCAGAACGCCTGCATGAAGTCCAAGCCAG
TTGGCCTGGTCCACATACCTGGGTCCTGCCAGCAAGCACACGTGCCCCCCATTGGATCACCGGACACCATAACGGCCTTG
CTGTCCGAATCAGCGCACACCCATTGGTCAGTGCACTCTGCCGTGCCTGGAACATGGCCCTTATCTCCACCAGCGCCAAC
GTGGCAGGCCAGCCGCCAGCACGTCGCCGTGAAGATCTGGATCCCTCACTGCTACCACACTTGGCAGGCATCGTAGACGG
TCCAACCGGTGGTTTGGCCCAACCAACATCCATCCGTGACGCACGCAGTGGACACATACTACGGCTATAA

Upstream 100 bases:

>100_bases
GCCCGTAAAGAAACAAATCAAAAAACGCATCGCCCCCAACATTACCCAATAAACGCCATTCCAACCCAGCATTCACCCCC
CTGACAGAACCACCTATGCT

Downstream 100 bases:

>100_bases
CCTGCATCGCCACACACGTTACCCTTTGCAACTCATCATCTTGATTGCCACATACCGCCTACCGTCAACATAACTCTACA
GAAAAATCCAAGACTAAAAT

Product: SUA5/yciO/yrdC domain-containing protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MPLTIHTDSNQRSWQLSAAENSMATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILV
TAELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWNMALISTSAN
VAGQPPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHILRL

Sequences:

>Translated_209_residues
MPLTIHTDSNQRSWQLSAAENSMATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILV
TAELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWNMALISTSAN
VAGQPPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHILRL
>Mature_208_residues
PLTIHTDSNQRSWQLSAAENSMATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVT
AELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLPASTRAPHWITGHHNGLAVRISAHPLVSALCRAWNMALISTSANV
AGQPPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHILRL

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=180, Percent_Identity=44.4444444444444, Blast_Score=162, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22572; Mature: 22441

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTIHTDSNQRSWQLSAAENSMATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQET
CCEEEECCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCEEEECCHHHCCCCCCCCHHH
AVHTLLNIKQRASGKGLILVTAELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLPAST
HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCC
RAPHWITGHHNGLAVRISAHPLVSALCRAWNMALISTSANVAGQPPARRREDLDPSLLPH
CCCEEEECCCCCEEEEEECCHHHHHHHHHHCEEEEEECCCCCCCCCCCHHCCCCHHHHHH
LAGIVDGPTGGLAQPTSIRDARSGHILRL
HHHHCCCCCCCCCCCCCCCCCCCCCEEEC
>Mature Secondary Structure 
PLTIHTDSNQRSWQLSAAENSMATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQET
CEEEECCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCEEEECCHHHCCCCCCCCHHH
AVHTLLNIKQRASGKGLILVTAELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLPAST
HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCC
RAPHWITGHHNGLAVRISAHPLVSALCRAWNMALISTSANVAGQPPARRREDLDPSLLPH
CCCEEEECCCCCEEEEEECCHHHHHHHHHHCEEEEEECCCCCCCCCCCHHCCCCHHHHHH
LAGIVDGPTGGLAQPTSIRDARSGHILRL
HHHHCCCCCCCCCCCCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA