Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682211
Identifier: 182682211
GI number: 182682211
Start: 1867524
End: 1868993
Strand: Reverse
Name: 182682211
Synonym: XfasM23_1690
Alternate gene names: NA
Gene position: 1868993-1867524 (Counterclockwise)
Preceding gene: 182682212
Following gene: 182682210
Centisome position: 73.71
GC content: 60.41
Gene sequence:
>1470_bases ATGACGAGGCCGGTGATCACCATCCTGGATGGCGGCAAGGGCCGTTCTCATGGCGGCGGCGGTGGTCATGGCGGTGTGCC AGGGTCCGATGACTGGAAGCAGCAGTTAACGCGCACCCGCGACGGTCATGTCGAGGGCACGATGCATAACCTCATCACCA TCATTGAGAACGATGAGCGGTTGAAAGCGTTGTTCTGGTTGAACGATTCCAGTAACCAGGTGGTGATGGCCCGTCCGGCA CCGTGGCAGGGCAGTACACGCGATGAGTTTGTGGATGCTGACAGTAGCGAGCTTGCGGCATGGCTCCAGCATCCAGAGCG CTATGGAATGAAGTGCAGCGATGACAACGTGCTAAAGGCCGTGATTGCGGTTGCACGGCGGTATCGGCGGCACCCGATCC GTGAATACCTGACGGGGGTGCAGTGGGACGGGACACCGCGCGTGGAGACGATGCTCATTGACATGTTCGGTGCCAGTGAC CGCACTTATTCGCGGCAAGCGTCGTTGTGTTTCATGGTCGGTGCCGTGGCGCGGGTGCTGTGGGTGGATCCAAAGAATCC ATCCATTGGGGCCAAGGTGGATTTCATGCTGGTGCTGGAAGGCCCGCAAGGCAAGCACAAGTCCACCTCACTGAGCGAAC TGTTCGGCACCTACTGGTTTGTAGAAACGGCTGAGTCGCCCACGGGGAAGGACTTTTATCAGGTCATCCAGGGGTGCTGG GGCGTGGAGATCGGCGAGATGGACAGCTTCGGCAAGGCGGATGTGACCGCGGTGAAAGTGGCCATCACCCGACGTACCGA TAAGTTTCGCGCGCCTTACGAACGCCTGCCTAATAGTTACCGGCGGGAGTGCGTGTTTGTCGGCACGACCAATGATCGGG AATACCTGAAGGATGCCACGGGCGGGCGGCGCTTTCTGCCGGTGCGTGCCGATGGCAACGTGGATGTCTCGCGCATTGTG GCCGAGCGCGATCAGCTATGGGCCGAGGCAGTGCGGCTGTTCCTTGATCACTTCCCGTACTGGGTATTGCCTGATGACGC CCCCGCCGAGCAGGCCGCCCGCTACATCGGCGATAGCTGGGAGGCCCGCGTGGAGCAATTCCTCGCCGGTCAATTTCGCA AAACAGGGGATGGGAAGGAGATTGCACCGCAGCGGTTGAAGGGTACTGCAGGGTGGCGTGTCCTGTGGACGACCACCGAT GAGCTACTGGAGTTTGCCATCGGCGTGGACCCGGCCAGGCACGACAGGAGTTCCCAGATGCGCGTTGCCAGCATCATGAA GCGCTTAGGGCGCGACCCTGTACAGGGGGACACCTGTGTCGAGGATACGTGGGAGCACCTGCGGAAACGCTGGCCGGACA CAAAAACACGAGAACAACGTTGGGTGCGCGAAGGCGCTTGCATTAACGAGGTAAGGCCTGTGTCTAAGCCACTGGATGAC AACGGGAGGGATGATGCGCCCGATTTCTGA
Upstream 100 bases:
>100_bases TTGCCGATGCCTTCGAAAAGGATGGCTGGACACCCCCGCAGGCAGCCGCCTGGGCGGCGGCGCGGCGTGTTGACGTCAAT GTGGTGCGGGGAGGGGGGCG
Downstream 100 bases:
>100_bases GCCGCCATTGTCCACACCTGTCCAGACCGTCCAAACCTCTGTCCAGACCTGGAACGAGCAACGGCGGGCCTGTCCAGACC GTCCAAACCTTTTTGACGTG
Product: virulence-associated E family protein
Products: NA
Alternate protein names: Virulence-Associated Protein E; Virulence-Associated E; DNA Primase Domain Protein; Phage-Like Protein; Helicase; Prophage Ps2 Protein; Prophage Lp3 Helicase; Phage Protein; Virulence-Associated Protein E Family Protein; Phage-Related Virulence-Associated Protein E; Primase C Terminal 2 Family; Pyocin R2_PP TraC Domain Protein; P-Loop ATPase And Inactivated Derivatives-Like; Virulence-Associated Protein E Domain-Containing Protein; P-Loop ATPase And Inactivated Derivatives-Like Protein; DNA Primase Domain-Containing Protein; TraC Domain-Containing Protein; Phage Integrase Protein; APSE-2 Prophage; P-Loop ATPase And Inactivated Derivative; Imidazoleglycerol Phosphate Synthase; Virulence-Associated E Domain Protein
Number of amino acids: Translated: 489; Mature: 488
Protein sequence:
>489_residues MTRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDERLKALFWLNDSSNQVVMARPA PWQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKAVIAVARRYRRHPIREYLTGVQWDGTPRVETMLIDMFGASD RTYSRQASLCFMVGAVARVLWVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCW GVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDATGGRRFLPVRADGNVDVSRIV AERDQLWAEAVRLFLDHFPYWVLPDDAPAEQAARYIGDSWEARVEQFLAGQFRKTGDGKEIAPQRLKGTAGWRVLWTTTD ELLEFAIGVDPARHDRSSQMRVASIMKRLGRDPVQGDTCVEDTWEHLRKRWPDTKTREQRWVREGACINEVRPVSKPLDD NGRDDAPDF
Sequences:
>Translated_489_residues MTRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDERLKALFWLNDSSNQVVMARPA PWQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKAVIAVARRYRRHPIREYLTGVQWDGTPRVETMLIDMFGASD RTYSRQASLCFMVGAVARVLWVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCW GVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDATGGRRFLPVRADGNVDVSRIV AERDQLWAEAVRLFLDHFPYWVLPDDAPAEQAARYIGDSWEARVEQFLAGQFRKTGDGKEIAPQRLKGTAGWRVLWTTTD ELLEFAIGVDPARHDRSSQMRVASIMKRLGRDPVQGDTCVEDTWEHLRKRWPDTKTREQRWVREGACINEVRPVSKPLDD NGRDDAPDF >Mature_488_residues TRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDERLKALFWLNDSSNQVVMARPAP WQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKAVIAVARRYRRHPIREYLTGVQWDGTPRVETMLIDMFGASDR TYSRQASLCFMVGAVARVLWVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCWG VEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDATGGRRFLPVRADGNVDVSRIVA ERDQLWAEAVRLFLDHFPYWVLPDDAPAEQAARYIGDSWEARVEQFLAGQFRKTGDGKEIAPQRLKGTAGWRVLWTTTDE LLEFAIGVDPARHDRSSQMRVASIMKRLGRDPVQGDTCVEDTWEHLRKRWPDTKTREQRWVREGACINEVRPVSKPLDDN GRDDAPDF
Specific function: Unknown
COG id: COG5545
COG function: function code R; Predicted P-loop ATPase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55337; Mature: 55206
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDER CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHEEEEEECCCE LKALFWLNDSSNQVVMARPAPWQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKA EEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHCHHHCCCCCCCHHHHHH VIAVARRYRRHPIREYLTGVQWDGTPRVETMLIDMFGASDRTYSRQASLCFMVGAVARVL HHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHEEEHHCCCCCCHHHHHHHHHHHHHHHHEE WVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCW EECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHHC GVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDAT CCEECCCCCCCCCCEEEEEEEEEECCHHHCCCHHHCCHHHHCCEEEEECCCCHHHHHHCC GGRRFLPVRADGNVDVSRIVAERDQLWAEAVRLFLDHFPYWVLPDDAPAEQAARYIGDSW CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCH EARVEQFLAGQFRKTGDGKEIAPQRLKGTAGWRVLWTTTDELLEFAIGVDPARHDRSSQM HHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHCCCCHHCCCHHHH RVASIMKRLGRDPVQGDTCVEDTWEHLRKRWPDTKTREQRWVREGACINEVRPVSKPLDD HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCC NGRDDAPDF CCCCCCCCC >Mature Secondary Structure TRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDER CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHEEEEEECCCE LKALFWLNDSSNQVVMARPAPWQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKA EEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHCHHHCCCCCCCHHHHHH VIAVARRYRRHPIREYLTGVQWDGTPRVETMLIDMFGASDRTYSRQASLCFMVGAVARVL HHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHEEEHHCCCCCCHHHHHHHHHHHHHHHHEE WVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCW EECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHHC GVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDAT CCEECCCCCCCCCCEEEEEEEEEECCHHHCCCHHHCCHHHHCCEEEEECCCCHHHHHHCC GGRRFLPVRADGNVDVSRIVAERDQLWAEAVRLFLDHFPYWVLPDDAPAEQAARYIGDSW CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCH EARVEQFLAGQFRKTGDGKEIAPQRLKGTAGWRVLWTTTDELLEFAIGVDPARHDRSSQM HHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHCCCCHHCCCHHHH RVASIMKRLGRDPVQGDTCVEDTWEHLRKRWPDTKTREQRWVREGACINEVRPVSKPLDD HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCC NGRDDAPDF CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA