Click here to switch to the map view.

The map label for this gene is dnaG [H]

Identifier: 182682212

GI number: 182682212

Start: 1868990

End: 1870045

Strand: Reverse

Name: dnaG [H]

Synonym: XfasM23_1691

Alternate gene names: 182682212

Gene position: 1870045-1868990 (Counterclockwise)

Preceding gene: 182682213

Following gene: 182682211

Centisome position: 73.75

GC content: 63.54

Gene sequence:

>1056_bases
ATGACTAGGGTAGATACGCAGGCATTACGCGCGCGGATTGATCTGGTTGAGGTGGTGGGCCGCTATGTGACGCTGCAGCG
TACAGGCGCTGAGTACACGGGGTTATGTCCGTTCCATGACGAGCACACCCCCTCGTTCACGGTGATTCCGCATAAAGGGT
TTGTGCATTGCTTTGGGTGTGGCGCGCATCATGATGCGATTGGCTTTGTGATGCGTTACCTCAACGTGGATTTCCGTGAG
GCGGTGCGCCAGCTTGATCGCGGTGCTTTGCCGCAGGCCGAGCAACAGGCGCAGCGGCAGCGGCCAGAGTATGTGCCTGA
CATGGTCTGGGTGCCGCTGCTGCCCGTACCGGAAGATGCGCCGGAGGTGATGGGTGATGCGCACTGGACGGTGCCGATAT
GGAATCCCAAGCGGGGCAGGGCCGCTCGGCTGAAGGTGCAGCGCCTGGATGCCTACCGTGATGCGCAGGGGCGTTTGCTC
GGCTACGTGGCGCGGGCGCAGATCAAGGATCGGGACACAGGGGCGCTAAAAAAGTGGACGCCGACGCTCACCTGGTGCGT
GAGTCCGACCGGAGCGCGGCAGTGGTGTTTGCAGCATTTTCCAGAACCGCGGCCCTTGTTTGGTTTGGATACGTTGGCGG
TCAAGCCAGACGCGCCGGTGTTGATTGTTGAAGGTGAAAAGTGTTGCGCAGCCGGCGCTCGCGCGTGGCCGCAGTATGCG
GTGGTTGCTTGGCCTGGTGGCGCGAACGGGATCCGTAAGGTGGACTGGACGCCGCTGGCTGGGCGCGATGTGGTGCTGTG
GCCGGATGCCGATGAGGTGGGCCGCAAGGCCATGCTGGGCAACCGCACGGATGCCGGTGATTTCAGGGCGGGTGTGGCGC
ACTACGTGTCGCGCGTTGGGGTGCGCAGCATTGGCATGATTGACACGCACGGGTGCAGCAAAGGCTGGGATCTTGCCGAT
GCCTTCGAAAAGGATGGCTGGACACCCCCGCAGGCAGCCGCCTGGGCGGCGGCGCGGCGTGTTGACGTCAATGTGGTGCG
GGGAGGGGGGCGATGA

Upstream 100 bases:

>100_bases
GAGCCAGGATGCAGGGAATATGTCGCCGCGTACTTTCGGGTGCAATGGGGGATACAGGTCAACCGTGAGAAGGCGCAGCG
GCGTCAGGCGGGGCGGCAGC

Downstream 100 bases:

>100_bases
CGAGGCCGGTGATCACCATCCTGGATGGCGGCAAGGGCCGTTCTCATGGCGGCGGCGGTGGTCATGGCGGTGTGCCAGGG
TCCGATGACTGGAAGCAGCA

Product: zinc finger CHC2-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTRVDTQALRARIDLVEVVGRYVTLQRTGAEYTGLCPFHDEHTPSFTVIPHKGFVHCFGCGAHHDAIGFVMRYLNVDFRE
AVRQLDRGALPQAEQQAQRQRPEYVPDMVWVPLLPVPEDAPEVMGDAHWTVPIWNPKRGRAARLKVQRLDAYRDAQGRLL
GYVARAQIKDRDTGALKKWTPTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYA
VVAWPGGANGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFRAGVAHYVSRVGVRSIGMIDTHGCSKGWDLAD
AFEKDGWTPPQAAAWAAARRVDVNVVRGGGR

Sequences:

>Translated_351_residues
MTRVDTQALRARIDLVEVVGRYVTLQRTGAEYTGLCPFHDEHTPSFTVIPHKGFVHCFGCGAHHDAIGFVMRYLNVDFRE
AVRQLDRGALPQAEQQAQRQRPEYVPDMVWVPLLPVPEDAPEVMGDAHWTVPIWNPKRGRAARLKVQRLDAYRDAQGRLL
GYVARAQIKDRDTGALKKWTPTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYA
VVAWPGGANGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFRAGVAHYVSRVGVRSIGMIDTHGCSKGWDLAD
AFEKDGWTPPQAAAWAAARRVDVNVVRGGGR
>Mature_350_residues
TRVDTQALRARIDLVEVVGRYVTLQRTGAEYTGLCPFHDEHTPSFTVIPHKGFVHCFGCGAHHDAIGFVMRYLNVDFREA
VRQLDRGALPQAEQQAQRQRPEYVPDMVWVPLLPVPEDAPEVMGDAHWTVPIWNPKRGRAARLKVQRLDAYRDAQGRLLG
YVARAQIKDRDTGALKKWTPTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYAV
VAWPGGANGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFRAGVAHYVSRVGVRSIGMIDTHGCSKGWDLADA
FEKDGWTPPQAAAWAAARRVDVNVVRGGGR

Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]

COG id: COG0358

COG function: function code L; DNA primase (bacterial type)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

Organism=Escherichia coli, GI1789447, Length=329, Percent_Identity=27.6595744680851, Blast_Score=91, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016136
- InterPro:   IPR013264
- InterPro:   IPR019475
- InterPro:   IPR006295
- InterPro:   IPR013173
- InterPro:   IPR006171
- InterPro:   IPR002694 [H]

Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]

EC number: 2.7.7.- [C]

Molecular weight: Translated: 38910; Mature: 38779

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRVDTQALRARIDLVEVVGRYVTLQRTGAEYTGLCPFHDEHTPSFTVIPHKGFVHCFGC
CCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEC
GAHHDAIGFVMRYLNVDFREAVRQLDRGALPQAEQQAQRQRPEYVPDMVWVPLLPVPEDA
CCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCC
PEVMGDAHWTVPIWNPKRGRAARLKVQRLDAYRDAQGRLLGYVARAQIKDRDTGALKKWT
HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHCC
PTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYA
CCEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCHHHHCCCCCCCCEE
VVAWPGGANGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFRAGVAHYVSRVG
EEEECCCCCCCEECCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
VRSIGMIDTHGCSKGWDLADAFEKDGWTPPQAAAWAAARRVDVNVVRGGGR
HHHCCEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHEEEEEEECCCCC
>Mature Secondary Structure 
TRVDTQALRARIDLVEVVGRYVTLQRTGAEYTGLCPFHDEHTPSFTVIPHKGFVHCFGC
CCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEC
GAHHDAIGFVMRYLNVDFREAVRQLDRGALPQAEQQAQRQRPEYVPDMVWVPLLPVPEDA
CCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCC
PEVMGDAHWTVPIWNPKRGRAARLKVQRLDAYRDAQGRLLGYVARAQIKDRDTGALKKWT
HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHCC
PTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYA
CCEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCHHHHCCCCCCCCEE
VVAWPGGANGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFRAGVAHYVSRVG
EEEECCCCCCCEECCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
VRSIGMIDTHGCSKGWDLADAFEKDGWTPPQAAAWAAARRVDVNVVRGGGR
HHHCCEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]