Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 182682128

GI number: 182682128

Start: 1781307

End: 1781936

Strand: Reverse

Name: ydhO [H]

Synonym: XfasM23_1606

Alternate gene names: 182682128

Gene position: 1781936-1781307 (Counterclockwise)

Preceding gene: 182682132

Following gene: 182682127

Centisome position: 70.27

GC content: 55.87

Gene sequence:

>630_bases
ATGTTAAGCATGGCTTGTCGACGGGCGGTGCGTACTGGGGCGCACTGTGATGAGGGTGGAAACGTAAAGGCGTTCGATTA
TCCTGACTCCATGAATAACAAGCCAGTTCCCATTGTTTTGCGGAGGACGTCCATTGGTTCGATCCTCTTCATCCTCCCTG
CAATGCTGATTGGTTGCAGTCGCGTGCCGGTCAAAACACAGCCCAAGCTCGCTTCAGTCAACGTGTGGCCCCTCACAACC
CCAGCCAATCCAGAGGCAGCCAATGAGGTCGTGATGCGTGCCTTGAGCTTGGTTGGCACTCCGTACCGCTTCGGTGGCAA
CACCCCTGAGAGTGGATTCGACTGCAGCGGTTTAGTCAGCTACGTCTACCGCGATGCACTCGACTTGCGTCTACCGCGCA
CTTCCTACGAGCTGGCCGCAGTGCAGGGTCCCAAGATTGACGCTGAACAACTGACCACTGGTGATTTGGTGTTCTTTGGG
AGTGCCCGTAGTGTCACTCACGTGGGCATCTACCTCAGTGAAGGTCGCTTCGTACATGCCCCCAGCAGTGGTGGCACCGT
GCGTTTGGATCGGCTTGATACCCCTTACTGGAGGGATCATTACACTGGCGCAAAACGTGTTTTACGCTGA

Upstream 100 bases:

>100_bases
GGCGCTTGACCGACCTCGGAAACAATGTAGTGAAAGCGAACAACACAGTCTTTTTCTATCTTCATATCTCACTCGTTGAT
GGGGCTATACGGTGACAGCC

Downstream 100 bases:

>100_bases
ATTGCAACAATCATCACTATACATAAAACGGAAATTTAACCTTTTTTGAACCTTATGCGAGCTGGACCGGGGCATCATCC
ACCCTTACTTTCGAAACACT

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCSRVPVKTQPKLASVNVWPLTT
PANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVFFG
SARSVTHVGIYLSEGRFVHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR

Sequences:

>Translated_209_residues
MLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCSRVPVKTQPKLASVNVWPLTT
PANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVFFG
SARSVTHVGIYLSEGRFVHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR
>Mature_209_residues
MLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCSRVPVKTQPKLASVNVWPLTT
PANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVSYVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVFFG
SARSVTHVGIYLSEGRFVHAPSSGGTVRLDRLDTPYWRDHYTGAKRVLR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=131, Percent_Identity=41.2213740458015, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786421, Length=122, Percent_Identity=42.6229508196721, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1788001, Length=114, Percent_Identity=45.6140350877193, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788501, Length=110, Percent_Identity=41.8181818181818, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 22815; Mature: 22815

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCS
CCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
RVPVKTQPKLASVNVWPLTTPANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVS
CCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHH
YVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVFFGSARSVTHVGIYLSEGRFVHA
HHHHHHHHEECCCCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEEEEEECCEEEEC
PSSGGTVRLDRLDTPYWRDHYTGAKRVLR
CCCCCEEEEECCCCCCHHHHHCHHHHHCC
>Mature Secondary Structure
MLSMACRRAVRTGAHCDEGGNVKAFDYPDSMNNKPVPIVLRRTSIGSILFILPAMLIGCS
CCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
RVPVKTQPKLASVNVWPLTTPANPEAANEVVMRALSLVGTPYRFGGNTPESGFDCSGLVS
CCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHH
YVYRDALDLRLPRTSYELAAVQGPKIDAEQLTTGDLVFFGSARSVTHVGIYLSEGRFVHA
HHHHHHHHEECCCCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEEEEEECCEEEEC
PSSGGTVRLDRLDTPYWRDHYTGAKRVLR
CCCCCEEEEECCCCCCHHHHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]