Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 182682127

GI number: 182682127

Start: 1780413

End: 1781252

Strand: Reverse

Name: ydhO [H]

Synonym: XfasM23_1605

Alternate gene names: 182682127

Gene position: 1781252-1780413 (Counterclockwise)

Preceding gene: 182682128

Following gene: 182682124

Centisome position: 70.25

GC content: 52.98

Gene sequence:

>840_bases
ATGCGAGCTGGACCGGGGCATCATCCACCCTTACTTTCGAAACACTGTGATGCTCGCGTGAAGATAAAAGACGAACAGTT
TAAATCTAACCCCGCTGTCCATCCATTTCAGAAGCCGCTTTATCTACTGTGCTCAACAACGCTGTTATTGGGTCCTATAT
CGGCTCTGGCGCAGGATATGACGCAACTCCCGGCTACTGTTGCCCTTCATGCCACTCCCGAGGGTGCTCAGGGTGAGTCT
GCTACTGCTAATACTACTGCTGTTGCCGCTACTCCCCCTCGCAACCGTACTGATGCGGCTACCACTGTTGCTTTGGCCGC
ATTGCTGCCGCATCTGGCCAACAACGATACGATCCCGCTGATGGATCGTTCTGCCCTGTTTACTGGTGACATGAATCGTG
CGTTGACTGGTTACGATGTATCCCAGAGCACCCTTGCAGCGGCCGAGAAAGCAGTCACCGATAAAAAGACCCAAGTAGTC
CTCAGGCGTGCAATGAACCTGCTTGGTACCCCCTATCGCTGGGGAGGCGCTCGTCCTGGAGGTTTTGATTGCAGTGGCTT
AGTCAACTATGTGTTCCGTACTGCGCTTGGGATCCAGTTACCGCGCGTCTCCCGTGATATGGCGCGTCACTCTGGCGGTG
AGTTGATTAAGGATCGTAAGGAGGTACGCACCGGTGACTTGGTGTTCTTCGGTAAAGCTGGTCGTATTACCCATGTAGGG
ATTGTTCTGGATAAAGGGTTATTTCTGCACGCTCCCAGAACTGGTAAAGACGTTCGTATGGATTCCTTCTCCAGTGGCTA
CTGGAGCCATAAATTTATCCAGGCGCGTCGCGTCCTTTGA

Upstream 100 bases:

>100_bases
TTACTGGAGGGATCATTACACTGGCGCAAAACGTGTTTTACGCTGAATTGCAACAATCATCACTATACATAAAACGGAAA
TTTAACCTTTTTTGAACCTT

Downstream 100 bases:

>100_bases
ATGATTCATACACTTTACAGTGTCATCGGATTGAAGAGGAGAGAGTATCTTGAATGCACTTTTTTCTTTGGAATCAGAAG
AATGGAGCATCTGCCATCTC

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDMTQLPATVALHATPEGAQGES
ATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKTQVV
LRRAMNLLGTPYRWGGARPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRITHVG
IVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL

Sequences:

>Translated_279_residues
MRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDMTQLPATVALHATPEGAQGES
ATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKTQVV
LRRAMNLLGTPYRWGGARPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRITHVG
IVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL
>Mature_279_residues
MRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDMTQLPATVALHATPEGAQGES
ATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPLMDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKTQVV
LRRAMNLLGTPYRWGGARPGGFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRITHVG
IVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=144, Percent_Identity=41.6666666666667, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786421, Length=126, Percent_Identity=38.8888888888889, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788501, Length=179, Percent_Identity=34.0782122905028, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788001, Length=112, Percent_Identity=43.75, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30172; Mature: 30172

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDM
CCCCCCCCCCHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQLPATVALHATPEGAQGESATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPL
HHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
MDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKTQVVLRRAMNLLGTPYRWGGARPG
ECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRITHVG
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEEEEE
IVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL
EEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MRAGPGHHPPLLSKHCDARVKIKDEQFKSNPAVHPFQKPLYLLCSTTLLLGPISALAQDM
CCCCCCCCCCHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQLPATVALHATPEGAQGESATANTTAVAATPPRNRTDAATTVALAALLPHLANNDTIPL
HHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
MDRSALFTGDMNRALTGYDVSQSTLAAAEKAVTDKKTQVVLRRAMNLLGTPYRWGGARPG
ECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GFDCSGLVNYVFRTALGIQLPRVSRDMARHSGGELIKDRKEVRTGDLVFFGKAGRITHVG
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEEEEE
IVLDKGLFLHAPRTGKDVRMDSFSSGYWSHKFIQARRVL
EEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]