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The map label for this gene is ccmH [H]

Identifier: 182682089

GI number: 182682089

Start: 1739694

End: 1740128

Strand: Direct

Name: ccmH [H]

Synonym: XfasM23_1567

Alternate gene names: 182682089

Gene position: 1739694-1740128 (Clockwise)

Preceding gene: 182682088

Following gene: 182682090

Centisome position: 68.61

GC content: 57.01

Gene sequence:

>435_bases
ATGAAACACGCACGTGCACTTCTGCTATGTGCGGCATTGCCCTTTGCCATCCAAGCACAGCTAAGGAGCGATCCAACACC
ACTCCACTATCGCGATACCGCCGAAGCAACCCGTTTTCACACCCTCACCGCAGAACTACGCTGCGTGCAATGCCCAAACC
AGTCACTGGCTGATTCTCAAGCCCCAATCGCCCAAGACCTGCGGCATCAAGTGTTGTCACTGATGCACCAAGGTCACAGC
GACGCACAAATCAAACAATTTATGGTGGATCGCTACGGCCTCTTCGTGCTGTACCACCCACCATTGCAGTACACCACCCT
GGCACTGTGGTTCGGTCCACTGCTCTTACTACTCATCGGCGTGACCGTGGTTACAGGGGTGATCCGGCGCTACCGCGCAC
CCCCACCGCCCTCAGACAACCGCACCACCAGGTGA

Upstream 100 bases:

>100_bases
AAGGCGCCCTGAATCAGCAGATGATCGAACACAAACTACTACCGATCCTTGCCGATATCGAACACTCACCCACCGCCGCA
CCCGCATTGCATCAGGCACC

Downstream 100 bases:

>100_bases
AACCCACGTTTTGGTTCCTGACGCTATTATTCACCCTGGCAACATTAAGCCTGGTGCTAAAACCACTGTGGCCCCAAGCA
CGCGGCACCCTGGCAATGTC

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKHARALLLCAALPFAIQAQLRSDPTPLHYRDTAEATRFHTLTAELRCVQCPNQSLADSQAPIAQDLRHQVLSLMHQGHS
DAQIKQFMVDRYGLFVLYHPPLQYTTLALWFGPLLLLLIGVTVVTGVIRRYRAPPPPSDNRTTR

Sequences:

>Translated_144_residues
MKHARALLLCAALPFAIQAQLRSDPTPLHYRDTAEATRFHTLTAELRCVQCPNQSLADSQAPIAQDLRHQVLSLMHQGHS
DAQIKQFMVDRYGLFVLYHPPLQYTTLALWFGPLLLLLIGVTVVTGVIRRYRAPPPPSDNRTTR
>Mature_144_residues
MKHARALLLCAALPFAIQAQLRSDPTPLHYRDTAEATRFHTLTAELRCVQCPNQSLADSQAPIAQDLRHQVLSLMHQGHS
DAQIKQFMVDRYGLFVLYHPPLQYTTLALWFGPLLLLLIGVTVVTGVIRRYRAPPPPSDNRTTR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=97, Percent_Identity=46.3917525773196, Blast_Score=96, Evalue=9e-22,
Organism=Escherichia coli, GI1790512, Length=62, Percent_Identity=46.7741935483871, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16251; Mature: 16251

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHARALLLCAALPFAIQAQLRSDPTPLHYRDTAEATRFHTLTAELRCVQCPNQSLADSQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC
APIAQDLRHQVLSLMHQGHSDAQIKQFMVDRYGLFVLYHPPLQYTTLALWFGPLLLLLIG
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHH
VTVVTGVIRRYRAPPPPSDNRTTR
HHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKHARALLLCAALPFAIQAQLRSDPTPLHYRDTAEATRFHTLTAELRCVQCPNQSLADSQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC
APIAQDLRHQVLSLMHQGHSDAQIKQFMVDRYGLFVLYHPPLQYTTLALWFGPLLLLLIG
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHH
VTVVTGVIRRYRAPPPPSDNRTTR
HHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA