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The map label for this gene is algU [H]

Identifier: 182681901

GI number: 182681901

Start: 1516163

End: 1516783

Strand: Direct

Name: algU [H]

Synonym: XfasM23_1369

Alternate gene names: 182681901

Gene position: 1516163-1516783 (Clockwise)

Preceding gene: 182681900

Following gene: 182681902

Centisome position: 59.79

GC content: 50.72

Gene sequence:

>621_bases
ATGGCCGAAACAAAACAACCTCAGTCCCTAGATATCGAATTGGTTCGGCGCGTGCAGTGCGGTGAATACGCTGCATTCGA
TACCTTAGTACGCAAATACCAACATCGAGTCATTGCCCTGATCGGACGCTACATCGCCGATTGGAGTGAATGTCAGGACG
TAGCCCAGGAAACATTTGTACGCGCCTATCGTGGGATCTGCAATTTTCGCGGCGACGCTCAGTTTTCGACCTGGTTACAT
CGTATCGCCGTGAATACCGCCAAGAACCACCTCGCCGCACGCAACCGTTCCCGGCTGAGCAATGAGGCCGAAATTGAAGA
GGCTGAACAGTTTAATCACAGCTCGCACTTAAGTGACACCAACACACCAGAACGAGAACTCATGCGCCAGGAGTTGGAAC
AAATCGTGATGAGCGCGGTCCAAGCACTGCCTGAAGAATTTAGAACTGCCTTTACTCTGTGCGAGATGGAAGGGTTGAGC
TACCAAGAGATCGCACAACGGATGGATTGCCCAATCGGAACCGTACGTTCACGTATTTTCCGGGCGCGCGAAGCGATAGA
CATAGAATTACGACCTTTTCTAGAGATCAACAACATTACCCGCAAACGATATCGTGTATGA

Upstream 100 bases:

>100_bases
TAGTGCTGTTATTACTAACAAAAAGCGTTGAACTTTATTTGTCACACTGCATGGCTACAGCGGCCTATTTCGTTCGGCTC
ACTCAGGAGTACGGCCCGAT

Downstream 100 bases:

>100_bases
GCAACCATCTGTCCGAAACTGCTGACAAGTTCGAACTGCACACCCGACTGCAATTGTCCCAACTGATTGATAGTGAACTA
CCGATGGACGAAGCACGCTT

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAETKQPQSLDIELVRRVQCGEYAAFDTLVRKYQHRVIALIGRYIADWSECQDVAQETFVRAYRGICNFRGDAQFSTWLH
RIAVNTAKNHLAARNRSRLSNEAEIEEAEQFNHSSHLSDTNTPERELMRQELEQIVMSAVQALPEEFRTAFTLCEMEGLS
YQEIAQRMDCPIGTVRSRIFRAREAIDIELRPFLEINNITRKRYRV

Sequences:

>Translated_206_residues
MAETKQPQSLDIELVRRVQCGEYAAFDTLVRKYQHRVIALIGRYIADWSECQDVAQETFVRAYRGICNFRGDAQFSTWLH
RIAVNTAKNHLAARNRSRLSNEAEIEEAEQFNHSSHLSDTNTPERELMRQELEQIVMSAVQALPEEFRTAFTLCEMEGLS
YQEIAQRMDCPIGTVRSRIFRAREAIDIELRPFLEINNITRKRYRV
>Mature_205_residues
AETKQPQSLDIELVRRVQCGEYAAFDTLVRKYQHRVIALIGRYIADWSECQDVAQETFVRAYRGICNFRGDAQFSTWLHR
IAVNTAKNHLAARNRSRLSNEAEIEEAEQFNHSSHLSDTNTPERELMRQELEQIVMSAVQALPEEFRTAFTLCEMEGLSY
QEIAQRMDCPIGTVRSRIFRAREAIDIELRPFLEINNITRKRYRV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=187, Percent_Identity=50.8021390374332, Blast_Score=198, Evalue=2e-52,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 24072; Mature: 23940

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETKQPQSLDIELVRRVQCGEYAAFDTLVRKYQHRVIALIGRYIADWSECQDVAQETFV
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RAYRGICNFRGDAQFSTWLHRIAVNTAKNHLAARNRSRLSNEAEIEEAEQFNHSSHLSDT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
NTPERELMRQELEQIVMSAVQALPEEFRTAFTLCEMEGLSYQEIAQRMDCPIGTVRSRIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
RAREAIDIELRPFLEINNITRKRYRV
HHHHHHCCCHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AETKQPQSLDIELVRRVQCGEYAAFDTLVRKYQHRVIALIGRYIADWSECQDVAQETFV
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RAYRGICNFRGDAQFSTWLHRIAVNTAKNHLAARNRSRLSNEAEIEEAEQFNHSSHLSDT
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
NTPERELMRQELEQIVMSAVQALPEEFRTAFTLCEMEGLSYQEIAQRMDCPIGTVRSRIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
RAREAIDIELRPFLEINNITRKRYRV
HHHHHHCCCHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]