| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182681902
Identifier: 182681902
GI number: 182681902
Start: 1516780
End: 1517505
Strand: Direct
Name: 182681902
Synonym: XfasM23_1370
Alternate gene names: NA
Gene position: 1516780-1517505 (Clockwise)
Preceding gene: 182681901
Following gene: 182681903
Centisome position: 59.82
GC content: 53.03
Gene sequence:
>726_bases ATGAGCAACCATCTGTCCGAAACTGCTGACAAGTTCGAACTGCACACCCGACTGCAATTGTCCCAACTGATTGATAGTGA ACTACCGATGGACGAAGCACGCTTTCTTCTACGTCGGTTGCAACACAATGAAGAATTAGCCAACTGCCAGGAACGTTGGC AACTGTATGGTGACGTGCTGCGTGGCGTTGCACTGGCTCCCGCCCCGACAGACTTTACGCTACGGGTACAAGCTGCAGTG GCGGCGGAAGCAACACCTGTACGCACTAAACACCGCTGGCGCGGTGGGACCGCGTTAATCGCCTCCGTTGCCGCAATCAT CTTACTAACACTACACGGGTGGCCACCGATGGCACCGCCGTTAACAGAAACAGAAATGGTATTTGCAACCACCGCACAAC TACTTAAGCCTCCTGTATCGCCAAAGATTGCTGCAATCTCCGAGTTGCAACACGGAGACGTTGGCATAACACAACGGGGC AAAACGACACACAACCAACAGGCTGCACCAGAACATACACTCGCTACGATTCCGGTAACACAAGACCCAGCTCGTCTGAA CCTATTCACACATTACGACACGATACAAACCAAACCCTGGCCGCGTGCTGTTCTCTCTGCTCAGGCACCGTTTAACGCAA ACCTGCCGGACACCGCTGTACGTCATGCGTTCTATCCATTCGAACCACCACTCCCAGAATCGCAACCTATGTCCTCACAG GAGTAA
Upstream 100 bases:
>100_bases GAACCGTACGTTCACGTATTTTCCGGGCGCGCGAAGCGATAGACATAGAATTACGACCTTTTCTAGAGATCAACAACATT ACCCGCAAACGATATCGTGT
Downstream 100 bases:
>100_bases GACCACCTCCTCACGGACTTCACGATGTCCCTTACCACTCACCGGTGTCGTTACCCCGGTTTGACTCACTTTGTTTCGCA ATCAGGAGATTGATCTGATG
Product: anti sigma-E protein RseA
Products: NA
Alternate protein names: Negative Regulator Of Sigma E Activity; Anti-Sigma Factor RseA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSNHLSETADKFELHTRLQLSQLIDSELPMDEARFLLRRLQHNEELANCQERWQLYGDVLRGVALAPAPTDFTLRVQAAV AAEATPVRTKHRWRGGTALIASVAAIILLTLHGWPPMAPPLTETEMVFATTAQLLKPPVSPKIAAISELQHGDVGITQRG KTTHNQQAAPEHTLATIPVTQDPARLNLFTHYDTIQTKPWPRAVLSAQAPFNANLPDTAVRHAFYPFEPPLPESQPMSSQ E
Sequences:
>Translated_241_residues MSNHLSETADKFELHTRLQLSQLIDSELPMDEARFLLRRLQHNEELANCQERWQLYGDVLRGVALAPAPTDFTLRVQAAV AAEATPVRTKHRWRGGTALIASVAAIILLTLHGWPPMAPPLTETEMVFATTAQLLKPPVSPKIAAISELQHGDVGITQRG KTTHNQQAAPEHTLATIPVTQDPARLNLFTHYDTIQTKPWPRAVLSAQAPFNANLPDTAVRHAFYPFEPPLPESQPMSSQ E >Mature_240_residues SNHLSETADKFELHTRLQLSQLIDSELPMDEARFLLRRLQHNEELANCQERWQLYGDVLRGVALAPAPTDFTLRVQAAVA AEATPVRTKHRWRGGTALIASVAAIILLTLHGWPPMAPPLTETEMVFATTAQLLKPPVSPKIAAISELQHGDVGITQRGK TTHNQQAAPEHTLATIPVTQDPARLNLFTHYDTIQTKPWPRAVLSAQAPFNANLPDTAVRHAFYPFEPPLPESQPMSSQE
Specific function: Unknown
COG id: COG3073
COG function: function code T; Negative regulator of sigma E activity
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26719; Mature: 26588
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNHLSETADKFELHTRLQLSQLIDSELPMDEARFLLRRLQHNEELANCQERWQLYGDVL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH RGVALAPAPTDFTLRVQAAVAAEATPVRTKHRWRGGTALIASVAAIILLTLHGWPPMAPP HHCCCCCCCCCEEEEEEEHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC LTETEMVFATTAQLLKPPVSPKIAAISELQHGDVGITQRGKTTHNQQAAPEHTLATIPVT CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC QDPARLNLFTHYDTIQTKPWPRAVLSAQAPFNANLPDTAVRHAFYPFEPPLPESQPMSSQ CCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC E C >Mature Secondary Structure SNHLSETADKFELHTRLQLSQLIDSELPMDEARFLLRRLQHNEELANCQERWQLYGDVL CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH RGVALAPAPTDFTLRVQAAVAAEATPVRTKHRWRGGTALIASVAAIILLTLHGWPPMAPP HHCCCCCCCCCEEEEEEEHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC LTETEMVFATTAQLLKPPVSPKIAAISELQHGDVGITQRGKTTHNQQAAPEHTLATIPVT CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC QDPARLNLFTHYDTIQTKPWPRAVLSAQAPFNANLPDTAVRHAFYPFEPPLPESQPMSSQ CCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC E C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA