| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is btuB [H]
Identifier: 182681900
GI number: 182681900
Start: 1512332
End: 1515208
Strand: Direct
Name: btuB [H]
Synonym: XfasM23_1368
Alternate gene names: 182681900
Gene position: 1512332-1515208 (Clockwise)
Preceding gene: 182681877
Following gene: 182681901
Centisome position: 59.64
GC content: 51.96
Gene sequence:
>2877_bases ATGAAATTTAAGCCCGATATACCGCATCGCTTGCTCGTCGTATCACTCGCTATTGCGATCGCTACGTTCGCCACCCCCAG CATCGTGTTCGCCCAAGAAAAGGATACAAGTGCTGCTGCCGTACTGGATGCGGTCAATGTGACCGGCACTCGACTGAAAA GCCAATCAATGACCGCTTCAAGTCCAGTAGCCGAGATTAATGCTGAAGAATTCCAGTACAGCGGAGCAACCAAGGTTGAA GATTTGGTCAACCAATATCCGCAGTTGTCTTTAAATTTCGATGGCTTTACCAACAATGGCTCGGATGGTTACGCCACCGT CGATCTGCGCGGCCTTGGGGCTAAGCGCACCCTGACTCTCGTCAATGGCAGACGCATTCCTAAGGGCATTATAGAGACCC CAGACATCACCATTATCCCCACAGCCATTGTTAAACGTGTCGATTTACTTACGGGCGGCGCATCCGCAGTGTACGGTTCA GATGCGATTGCTGGCGTGGTTAACTTTGTCCTTGATGACGCGTTTCATGGCATCAGTGTCAACGCCGGTTACTCGGCGTA TCAGCACAACAATGACAACACCTACATGCGTGGCTTGATGGACAAAGCCGGCTACCCTTATCCCAAAGGGGGATCTGGCT TTGACGGTGTTTCCCGAAATATCGACTTGGCAATCGGTGGCAATTTCGGAGAAAGCGGCCACGCCACGACTTGGGTCACT TGGCGCCAGAACGATGGGCTATTACAGGGGCAGCGTGACTATTCTTCGTGTGCACTCAAGCCCAATGGTACCGGCTGTGG CGGCTCGCTCACCGCTAACCCACCTAATTTCAACATCGTGGCACCAACGGCCGGCACGTTTTTCGTGCTTCCTTCAGCCA ATGGGACGTGGTCCAAAACGGACACCCCCAACCTGTACAACTATGCACCGGTCAATTACTACCAACGTCCAGATACCCGC TACACCGCTGGTACTAACATCCAGTATGAAATCAATAGCCATTTCAAACCGTATGTTGAAGCGTTGTTTGTTAATCACCG CAGCTCAACACAAATAGCCCCCTCAGGTACATTTTTTAATGAATTAAAAGTGAATTGCAGTACCGCCGTCATCGGTAGCC TGTGCAACGATGTGGGCATTACTGACAGCGCATTTAGTGTCTATGTTGCCAAGCGCAACATTGAAGGTGGACCACGCAGC ACCAACACCGACACGAGTAGTGGCAGCATCACCGCCGGCACTGGTGGCAACCTCATCGGTAACTGGTCCTACGACGCTTC ATTCACCTACAACCGCAGTGCTACAAAGTCAGAAAGTTTCAATGACTTTATAACCACACGGGTACACGACGCGTTATTGG GCTGCCCAACTGGGTCGTTCGACGGCTGCATTCCTTACAACGTGTGGACAAACAACATAAGTGCAGCCGCTGCGCAATCA CTACAGGGCGTGGGTATTGTCAATTACACCACCTCAATGAAAGTGTTCAACGCCTACGTTACTGGTGACTTCGGCTATGC GCTGCCCTGGGCAAACAACAAGCCAATCAATTTAGTCGCCGGCTACGAGTGGCGCACCGAAGGCTACACCCGTACTGCCG ACAGCAATACACAGGCTGGCAATTTTGCTGGATCAGGCGGCCCTACCTCCAACGTAGATAATAGTATTAGCGTCAAAGAG CTTTTCCTGGAGAGCGCAGTCCCGTTGCTTGCCAATACTGGCATTCTGAAAGAGCTTGATTTGCAGTTCGGGTATCGCCG TTCTAAGTACGATGTTTCCGGGAGCACCAACACTTATAAAGCAGGTTTTGGTGCCAGTTTCGCTGAGGGCCAGTACTTAC TGCGCGGTGGCTGGAACCGTGCAATCCGCGCACCAAGCATCACCGAGCTGTATGAACCCAATACGATTGCACTCTGGGAT GGTAGCGATCCTTGTGCAGGGACCTCTCCAACGTTCACTCAGGCACAGTGTGCTAACACTGGCGTGACTGCTGCTCGATA CGGAAACATCACTGCAAACCCAAGCGGTCAGTACAACGAGATCAGTGGTGGTAACAAAAACCTCAAGCCGGAAATCGCTG ATACCTGGACCCTTGGATTCGCCGCTACACCGATCAAAAACCTTGATCTGAGCGCCGATTATTACAGCATCAAAATAAAG GATACGATCCGCACGATCGGTGCATCAAATATCCTAGCGGCCTGCGCTCTGACAAACGATGCCAATCTGTGCAGCCGCAT CCGCCGTAATAGCGCCACTGGGGACTTGTTCCTCGGAAGCGATCCAGCTACCTCCGGCCTGGTATTGAACTCGCGGGGCA ACTTCGGTGCATTGCAGTTCCGTGGTATCGACTTAACAGCTTCATATGCCTGGAACGTCGGCCCAGGGCGGTTGACCACC AACATGATCGGCAACTACGTGATCAAGCAGGACTATCAACCCGTCCCCGGTATCAGTGACAACAATTACAGTTGCGCTGG CATTGTCAATACCGCTTGCGGCAACACTAACGGCACTAAGGGAGGGACCTCAAAGTGGCGTCACATGGTGAATGTGCGCT ACGGTTTTGACCGCTACACGATGGGTCTGCGCTGGCGCTATATTGGAAAGATGAATTACGAGGACACGGATGGAACACCA GGTTCGACCGATAAATTAGTGGTCAACGGCGGAAATCGAGTTTCAGCCTACAACTACCTGGATTTGACCGGGTCAATACA ACTGGATAATGACATCACCTGGACGATGGGACTGAACAATGTGTTCGACCGTGAACCTCCTCTGGTCGGCAGTTCGTTGA GCTATAACGGCAATGCGCTGAAGGGCTATGACCAAGCCGGACGCTATTTCTTCACCAGCATAGGGTTGAAGTTCTAA
Upstream 100 bases:
>100_bases CACCCCATATCTTCTGGCGACTGCCGAAGAGCCTTGCCAGGTCGGTATTTTCTACGATTGATCAAGACACTCTGCGGCAT TTCAGAGAGAGTAAACAGAA
Downstream 100 bases:
>100_bases TTGCAACGTTAATCGGTACGCATTGATACAAGCGACGGCGGGGGCAACCCCGCCGTTTACATTCAGGCGATTCGTTCGAA CCAGTGATCCACGCAACACT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 958; Mature: 958
Protein sequence:
>958_residues MKFKPDIPHRLLVVSLAIAIATFATPSIVFAQEKDTSAAAVLDAVNVTGTRLKSQSMTASSPVAEINAEEFQYSGATKVE DLVNQYPQLSLNFDGFTNNGSDGYATVDLRGLGAKRTLTLVNGRRIPKGIIETPDITIIPTAIVKRVDLLTGGASAVYGS DAIAGVVNFVLDDAFHGISVNAGYSAYQHNNDNTYMRGLMDKAGYPYPKGGSGFDGVSRNIDLAIGGNFGESGHATTWVT WRQNDGLLQGQRDYSSCALKPNGTGCGGSLTANPPNFNIVAPTAGTFFVLPSANGTWSKTDTPNLYNYAPVNYYQRPDTR YTAGTNIQYEINSHFKPYVEALFVNHRSSTQIAPSGTFFNELKVNCSTAVIGSLCNDVGITDSAFSVYVAKRNIEGGPRS TNTDTSSGSITAGTGGNLIGNWSYDASFTYNRSATKSESFNDFITTRVHDALLGCPTGSFDGCIPYNVWTNNISAAAAQS LQGVGIVNYTTSMKVFNAYVTGDFGYALPWANNKPINLVAGYEWRTEGYTRTADSNTQAGNFAGSGGPTSNVDNSISVKE LFLESAVPLLANTGILKELDLQFGYRRSKYDVSGSTNTYKAGFGASFAEGQYLLRGGWNRAIRAPSITELYEPNTIALWD GSDPCAGTSPTFTQAQCANTGVTAARYGNITANPSGQYNEISGGNKNLKPEIADTWTLGFAATPIKNLDLSADYYSIKIK DTIRTIGASNILAACALTNDANLCSRIRRNSATGDLFLGSDPATSGLVLNSRGNFGALQFRGIDLTASYAWNVGPGRLTT NMIGNYVIKQDYQPVPGISDNNYSCAGIVNTACGNTNGTKGGTSKWRHMVNVRYGFDRYTMGLRWRYIGKMNYEDTDGTP GSTDKLVVNGGNRVSAYNYLDLTGSIQLDNDITWTMGLNNVFDREPPLVGSSLSYNGNALKGYDQAGRYFFTSIGLKF
Sequences:
>Translated_958_residues MKFKPDIPHRLLVVSLAIAIATFATPSIVFAQEKDTSAAAVLDAVNVTGTRLKSQSMTASSPVAEINAEEFQYSGATKVE DLVNQYPQLSLNFDGFTNNGSDGYATVDLRGLGAKRTLTLVNGRRIPKGIIETPDITIIPTAIVKRVDLLTGGASAVYGS DAIAGVVNFVLDDAFHGISVNAGYSAYQHNNDNTYMRGLMDKAGYPYPKGGSGFDGVSRNIDLAIGGNFGESGHATTWVT WRQNDGLLQGQRDYSSCALKPNGTGCGGSLTANPPNFNIVAPTAGTFFVLPSANGTWSKTDTPNLYNYAPVNYYQRPDTR YTAGTNIQYEINSHFKPYVEALFVNHRSSTQIAPSGTFFNELKVNCSTAVIGSLCNDVGITDSAFSVYVAKRNIEGGPRS TNTDTSSGSITAGTGGNLIGNWSYDASFTYNRSATKSESFNDFITTRVHDALLGCPTGSFDGCIPYNVWTNNISAAAAQS LQGVGIVNYTTSMKVFNAYVTGDFGYALPWANNKPINLVAGYEWRTEGYTRTADSNTQAGNFAGSGGPTSNVDNSISVKE LFLESAVPLLANTGILKELDLQFGYRRSKYDVSGSTNTYKAGFGASFAEGQYLLRGGWNRAIRAPSITELYEPNTIALWD GSDPCAGTSPTFTQAQCANTGVTAARYGNITANPSGQYNEISGGNKNLKPEIADTWTLGFAATPIKNLDLSADYYSIKIK DTIRTIGASNILAACALTNDANLCSRIRRNSATGDLFLGSDPATSGLVLNSRGNFGALQFRGIDLTASYAWNVGPGRLTT NMIGNYVIKQDYQPVPGISDNNYSCAGIVNTACGNTNGTKGGTSKWRHMVNVRYGFDRYTMGLRWRYIGKMNYEDTDGTP GSTDKLVVNGGNRVSAYNYLDLTGSIQLDNDITWTMGLNNVFDREPPLVGSSLSYNGNALKGYDQAGRYFFTSIGLKF >Mature_958_residues MKFKPDIPHRLLVVSLAIAIATFATPSIVFAQEKDTSAAAVLDAVNVTGTRLKSQSMTASSPVAEINAEEFQYSGATKVE DLVNQYPQLSLNFDGFTNNGSDGYATVDLRGLGAKRTLTLVNGRRIPKGIIETPDITIIPTAIVKRVDLLTGGASAVYGS DAIAGVVNFVLDDAFHGISVNAGYSAYQHNNDNTYMRGLMDKAGYPYPKGGSGFDGVSRNIDLAIGGNFGESGHATTWVT WRQNDGLLQGQRDYSSCALKPNGTGCGGSLTANPPNFNIVAPTAGTFFVLPSANGTWSKTDTPNLYNYAPVNYYQRPDTR YTAGTNIQYEINSHFKPYVEALFVNHRSSTQIAPSGTFFNELKVNCSTAVIGSLCNDVGITDSAFSVYVAKRNIEGGPRS TNTDTSSGSITAGTGGNLIGNWSYDASFTYNRSATKSESFNDFITTRVHDALLGCPTGSFDGCIPYNVWTNNISAAAAQS LQGVGIVNYTTSMKVFNAYVTGDFGYALPWANNKPINLVAGYEWRTEGYTRTADSNTQAGNFAGSGGPTSNVDNSISVKE LFLESAVPLLANTGILKELDLQFGYRRSKYDVSGSTNTYKAGFGASFAEGQYLLRGGWNRAIRAPSITELYEPNTIALWD GSDPCAGTSPTFTQAQCANTGVTAARYGNITANPSGQYNEISGGNKNLKPEIADTWTLGFAATPIKNLDLSADYYSIKIK DTIRTIGASNILAACALTNDANLCSRIRRNSATGDLFLGSDPATSGLVLNSRGNFGALQFRGIDLTASYAWNVGPGRLTT NMIGNYVIKQDYQPVPGISDNNYSCAGIVNTACGNTNGTKGGTSKWRHMVNVRYGFDRYTMGLRWRYIGKMNYEDTDGTP GSTDKLVVNGGNRVSAYNYLDLTGSIQLDNDITWTMGLNNVFDREPPLVGSSLSYNGNALKGYDQAGRYFFTSIGLKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=174, Percent_Identity=30.4597701149425, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 102781; Mature: 102781
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKPDIPHRLLVVSLAIAIATFATPSIVFAQEKDTSAAAVLDAVNVTGTRLKSQSMTAS CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHEEECCCCCCEEECCCCCCC SPVAEINAEEFQYSGATKVEDLVNQYPQLSLNFDGFTNNGSDGYATVDLRGLGAKRTLTL CCHHHCCHHHEECCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEE VNGRRIPKGIIETPDITIIPTAIVKRVDLLTGGASAVYGSDAIAGVVNFVLDDAFHGISV ECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCEEE NAGYSAYQHNNDNTYMRGLMDKAGYPYPKGGSGFDGVSRNIDLAIGGNFGESGHATTWVT CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEE WRQNDGLLQGQRDYSSCALKPNGTGCGGSLTANPPNFNIVAPTAGTFFVLPSANGTWSKT EECCCCCEECCCCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCC DTPNLYNYAPVNYYQRPDTRYTAGTNIQYEINSHFKPYVEALFVNHRSSTQIAPSGTFFN CCCCCEEECCCCCEECCCCCEECCCEEEEEECCCCCCEEEEEEEECCCCCEECCCCCEEE ELKVNCSTAVIGSLCNDVGITDSAFSVYVAKRNIEGGPRSTNTDTSSGSITAGTGGNLIG EEEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCEEE NWSYDASFTYNRSATKSESFNDFITTRVHDALLGCPTGSFDGCIPYNVWTNNISAAAAQS ECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHH LQGVGIVNYTTSMKVFNAYVTGDFGYALPWANNKPINLVAGYEWRTEGYTRTADSNTQAG CCCCEEEEEECCEEEEEEEEECCCCEECCCCCCCCEEEEECCEEECCCEEECCCCCCCCC NFAGSGGPTSNVDNSISVKELFLESAVPLLANTGILKELDLQFGYRRSKYDVSGSTNTYK CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEHHHHCCCCCCEEECCCCCCEEE AGFGASFAEGQYLLRGGWNRAIRAPSITELYEPNTIALWDGSDPCAGTSPTFTQAQCANT CCCCCCCCCCCEEEECCCCCEECCCCHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCC GVTAARYGNITANPSGQYNEISGGNKNLKPEIADTWTLGFAATPIKNLDLSADYYSIKIK CCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCEEEEEEE DTIRTIGASNILAACALTNDANLCSRIRRNSATGDLFLGSDPATSGLVLNSRGNFGALQF HHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCCCEEEE RGIDLTASYAWNVGPGRLTTNMIGNYVIKQDYQPVPGISDNNYSCAGIVNTACGNTNGTK EEEEEEEEEEEECCCCCEEHHHHCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCC GGTSKWRHMVNVRYGFDRYTMGLRWRYIGKMNYEDTDGTPGSTDKLVVNGGNRVSAYNYL CCCHHHHEEEEEEECCCEEEECEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEEE DLTGSIQLDNDITWTMGLNNVFDREPPLVGSSLSYNGNALKGYDQAGRYFFTSIGLKF EEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCEEEEECCCCC >Mature Secondary Structure MKFKPDIPHRLLVVSLAIAIATFATPSIVFAQEKDTSAAAVLDAVNVTGTRLKSQSMTAS CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHEEECCCCCCEEECCCCCCC SPVAEINAEEFQYSGATKVEDLVNQYPQLSLNFDGFTNNGSDGYATVDLRGLGAKRTLTL CCHHHCCHHHEECCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEE VNGRRIPKGIIETPDITIIPTAIVKRVDLLTGGASAVYGSDAIAGVVNFVLDDAFHGISV ECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCEEE NAGYSAYQHNNDNTYMRGLMDKAGYPYPKGGSGFDGVSRNIDLAIGGNFGESGHATTWVT CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEE WRQNDGLLQGQRDYSSCALKPNGTGCGGSLTANPPNFNIVAPTAGTFFVLPSANGTWSKT EECCCCCEECCCCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCC DTPNLYNYAPVNYYQRPDTRYTAGTNIQYEINSHFKPYVEALFVNHRSSTQIAPSGTFFN CCCCCEEECCCCCEECCCCCEECCCEEEEEECCCCCCEEEEEEEECCCCCEECCCCCEEE ELKVNCSTAVIGSLCNDVGITDSAFSVYVAKRNIEGGPRSTNTDTSSGSITAGTGGNLIG EEEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCEEE NWSYDASFTYNRSATKSESFNDFITTRVHDALLGCPTGSFDGCIPYNVWTNNISAAAAQS ECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHH LQGVGIVNYTTSMKVFNAYVTGDFGYALPWANNKPINLVAGYEWRTEGYTRTADSNTQAG CCCCEEEEEECCEEEEEEEEECCCCEECCCCCCCCEEEEECCEEECCCEEECCCCCCCCC NFAGSGGPTSNVDNSISVKELFLESAVPLLANTGILKELDLQFGYRRSKYDVSGSTNTYK CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEHHHHCCCCCCEEECCCCCCEEE AGFGASFAEGQYLLRGGWNRAIRAPSITELYEPNTIALWDGSDPCAGTSPTFTQAQCANT CCCCCCCCCCCEEEECCCCCEECCCCHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCC GVTAARYGNITANPSGQYNEISGGNKNLKPEIADTWTLGFAATPIKNLDLSADYYSIKIK CCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCEEEEEEE DTIRTIGASNILAACALTNDANLCSRIRRNSATGDLFLGSDPATSGLVLNSRGNFGALQF HHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCCCEEEE RGIDLTASYAWNVGPGRLTTNMIGNYVIKQDYQPVPGISDNNYSCAGIVNTACGNTNGTK EEEEEEEEEEEECCCCCEEHHHHCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCC GGTSKWRHMVNVRYGFDRYTMGLRWRYIGKMNYEDTDGTPGSTDKLVVNGGNRVSAYNYL CCCHHHHEEEEEEECCCEEEECEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEEE DLTGSIQLDNDITWTMGLNNVFDREPPLVGSSLSYNGNALKGYDQAGRYFFTSIGLKF EEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]