Click here to switch to the map view.

The map label for this gene is ygcF [C]

Identifier: 182681498

GI number: 182681498

Start: 1116896

End: 1117549

Strand: Direct

Name: ygcF [C]

Synonym: XfasM23_0952

Alternate gene names: 182681498

Gene position: 1116896-1117549 (Clockwise)

Preceding gene: 182681497

Following gene: 182681500

Centisome position: 44.05

GC content: 47.71

Gene sequence:

>654_bases
ATGAATGCCACCAGGTCACAGTTAAAGATCTCCGAAATATTTTTATCCCTCCAAGGCGAAGCTAATAGCGTTGGTTGGCC
AACAGTATTTGTACGCCTGACGGGTTGTCCACTGCGCTGTCAATACTGCGATACTTCTTATGCCTTTCACGGCGGTGAGT
GGCGCAGTATCGACACTATTGTTAATGAGGTGCGCAGTTATGGTGTGCGTCACGTTTGTGTCACTGGGGGTGAACCACTT
GCTCAAAAACGTTGTTTGCTATTACTTGAAAAATTATGTGATGCCGGCTTTGAGGTTTCATTAGAAACCTCAGGTGCGCT
CGATATTGCTGCAGTTGATTCACGGGTATCGCGTGTAGTCGACATTAAAACTCCTGGATCTGGAGAGGCACATCGCAATC
ACTGGCCCAATCTGACGTTACTAACCCCCAACGACCAAATCAAGTTTGTGCTATGCAGCCGTGTCGACTATGAGTGGGCA
CGTACTTGTGTTGCTGAGCATGAATTAGAACGACGTTGTATGGTCTGGTTTTCTCCGAGCAAGCAAGACATAGCACCCAC
TTTACTCGCTGATTGGATTATTTCCGACCGTCTAGGAGTACGCTTCCAGTTGCAATTACACAAGTTGTTATGGAACGACG
AGCCGGGACGCTGA

Upstream 100 bases:

>100_bases
AGAGCGCTTACAATCAATGAAGTTAAGTCAGGCAATGCGCTGAATAATCGTATCTTTTTTTCATCGCTTTGAATGACCAG
AGCGGCATAATAATCAATTA

Downstream 100 bases:

>100_bases
GGTGATTCACTACTCCTTTTGGAAACTGCAAAATACTCCGATACCTACCACAACTGCTTAGTCAAAGTTTTTATTGCAGT
CTAGCGTTTCGGTAGTACGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNATRSQLKISEIFLSLQGEANSVGWPTVFVRLTGCPLRCQYCDTSYAFHGGEWRSIDTIVNEVRSYGVRHVCVTGGEPL
AQKRCLLLLEKLCDAGFEVSLETSGALDIAAVDSRVSRVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWA
RTCVAEHELERRCMVWFSPSKQDIAPTLLADWIISDRLGVRFQLQLHKLLWNDEPGR

Sequences:

>Translated_217_residues
MNATRSQLKISEIFLSLQGEANSVGWPTVFVRLTGCPLRCQYCDTSYAFHGGEWRSIDTIVNEVRSYGVRHVCVTGGEPL
AQKRCLLLLEKLCDAGFEVSLETSGALDIAAVDSRVSRVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWA
RTCVAEHELERRCMVWFSPSKQDIAPTLLADWIISDRLGVRFQLQLHKLLWNDEPGR
>Mature_217_residues
MNATRSQLKISEIFLSLQGEANSVGWPTVFVRLTGCPLRCQYCDTSYAFHGGEWRSIDTIVNEVRSYGVRHVCVTGGEPL
AQKRCLLLLEKLCDAGFEVSLETSGALDIAAVDSRVSRVVDIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWA
RTCVAEHELERRCMVWFSPSKQDIAPTLLADWIISDRLGVRFQLQLHKLLWNDEPGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=125, Percent_Identity=32.8, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24531; Mature: 24531

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATRSQLKISEIFLSLQGEANSVGWPTVFVRLTGCPLRCQYCDTSYAFHGGEWRSIDTI
CCCCHHHHEEEHEEEEECCCCCCCCCCEEEEEEECCCEEEEECCCCEEECCCCCCHHHHH
VNEVRSYGVRHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALDIAAVDSRVSRVV
HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHHHHEEE
DIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTCVAEHELERRCMVWFSPS
EEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCC
KQDIAPTLLADWIISDRLGVRFQLQLHKLLWNDEPGR
CCCHHHHHHHHHHHHCCCCEEEEEEEEEHHCCCCCCC
>Mature Secondary Structure
MNATRSQLKISEIFLSLQGEANSVGWPTVFVRLTGCPLRCQYCDTSYAFHGGEWRSIDTI
CCCCHHHHEEEHEEEEECCCCCCCCCCEEEEEEECCCEEEEECCCCEEECCCCCCHHHHH
VNEVRSYGVRHVCVTGGEPLAQKRCLLLLEKLCDAGFEVSLETSGALDIAAVDSRVSRVV
HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEHHHHHHHEEE
DIKTPGSGEAHRNHWPNLTLLTPNDQIKFVLCSRVDYEWARTCVAEHELERRCMVWFSPS
EEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCC
KQDIAPTLLADWIISDRLGVRFQLQLHKLLWNDEPGR
CCCHHHHHHHHHHHHCCCCEEEEEEEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]