Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is nudG [H]
Identifier: 182680967
GI number: 182680967
Start: 506775
End: 507737
Strand: Direct
Name: nudG [H]
Synonym: XfasM23_0405
Alternate gene names: 182680967
Gene position: 506775-507737 (Clockwise)
Preceding gene: 182680966
Following gene: 182680970
Centisome position: 19.99
GC content: 58.98
Gene sequence:
>963_bases ATGACTGATTCTTTGCGATCTATTCATGTTGTGGCAGCTGTGATTGCTGATGTGCGAGGACGCTTGCTGCTGAGTAGGCG TACCGAGAACAGCGATATGCCTGGCTTGTGGGAATTTCCAGGGGGAAAGCGTGAGTCTGGTGAGACATCCGAGCAGGCGT TGGCCCGCGAGTTGTATGAGGAACTTGGGATCAGCGCTGACGTTGGCGAGTGGTTGATGGAGGTGCCGCAGTTGTATCCG GGTAAACGTCTGCGTCTGGAGGTGAGGCGGGTGCGTGCTTGGAAGGGGGGGCTGCGGGGACGTGAGGGACAGGCGTTGAC GTGGGTCGAACCCGATAAATTGTTGCGTTATTCGATGCCGCCGGCTGATCAGCCGGTCGTGGGGATGTTGCGTCAACCAG ACCGTTATTTGGTGACACCTGAGCCTGGGGAGCAGGATGCTGAGTGGTTGGATGCAGTGGAGCATGCGTATCGGCTTGGC ATTGAGCGGATCCAGCTGCGCATGCGTCAACACGATCCGGTGCGTTGGTCGGGGTTGGTGCGCCAAGCAGTGCAACGTCG TGGCCGTGCCCATGTGGAAGTGTTGCTGAATCGCGATATTGCTTTGGCCGAGGCCTTGGGTATCGGGGTGCATTTGGGGG CTGAACAGTTGGCTGTGTTGGATGCGCGTCCGTTGCCGGTTGGGTTGCCGGTCGGTGCGTCGTGTCATTGCCTGGCCGAT TTGTGCCATGCCCAGCGCATTGGGTGTGATTTTGCGGTGCTCGGCCCGGTGTTACCGACGGAGAGTCATCCTGGTGCAGT GACATTGGGGTGGGAGAGGTTTGAGCAGTTGCGCGAGCAGGTTGCATTGCCAATCTATGCGATCGGTGGGATGTGCGCTG ATCAGGTCAAGGAAGCACGGCGTCATGGTGCGCAAGGGATTGCTGCCATGCGTGGTTTGTGGCCGGGGGGAGCGAAGCAA TAA
Upstream 100 bases:
>100_bases GGAGATGGATGTCCTGGGATACCCTGCGATGTGTGAATCAAGTCGTATGTATGAGTCATTCTGTTGCATGGGATGACGAG ATATCGGCAAGCTTGCGGAT
Downstream 100 bases:
>100_bases GGCGTGGCTACTGTTGCTGTATGTGATGCAGTGGTGGGCGTGCTGTGGTGGCTTCAATAGCCTAAGCGTTGCAGCACTTG GGTGCTTGGTTTGGCTAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MTDSLRSIHVVAAVIADVRGRLLLSRRTENSDMPGLWEFPGGKRESGETSEQALARELYEELGISADVGEWLMEVPQLYP GKRLRLEVRRVRAWKGGLRGREGQALTWVEPDKLLRYSMPPADQPVVGMLRQPDRYLVTPEPGEQDAEWLDAVEHAYRLG IERIQLRMRQHDPVRWSGLVRQAVQRRGRAHVEVLLNRDIALAEALGIGVHLGAEQLAVLDARPLPVGLPVGASCHCLAD LCHAQRIGCDFAVLGPVLPTESHPGAVTLGWERFEQLREQVALPIYAIGGMCADQVKEARRHGAQGIAAMRGLWPGGAKQ
Sequences:
>Translated_320_residues MTDSLRSIHVVAAVIADVRGRLLLSRRTENSDMPGLWEFPGGKRESGETSEQALARELYEELGISADVGEWLMEVPQLYP GKRLRLEVRRVRAWKGGLRGREGQALTWVEPDKLLRYSMPPADQPVVGMLRQPDRYLVTPEPGEQDAEWLDAVEHAYRLG IERIQLRMRQHDPVRWSGLVRQAVQRRGRAHVEVLLNRDIALAEALGIGVHLGAEQLAVLDARPLPVGLPVGASCHCLAD LCHAQRIGCDFAVLGPVLPTESHPGAVTLGWERFEQLREQVALPIYAIGGMCADQVKEARRHGAQGIAAMRGLWPGGAKQ >Mature_319_residues TDSLRSIHVVAAVIADVRGRLLLSRRTENSDMPGLWEFPGGKRESGETSEQALARELYEELGISADVGEWLMEVPQLYPG KRLRLEVRRVRAWKGGLRGREGQALTWVEPDKLLRYSMPPADQPVVGMLRQPDRYLVTPEPGEQDAEWLDAVEHAYRLGI ERIQLRMRQHDPVRWSGLVRQAVQRRGRAHVEVLLNRDIALAEALGIGVHLGAEQLAVLDARPLPVGLPVGASCHCLADL CHAQRIGCDFAVLGPVLPTESHPGAVTLGWERFEQLREQVALPIYAIGGMCADQVKEARRHGAQGIAAMRGLWPGGAKQ
Specific function: Specific for pyrimidine substrates. Acts on 5-methyl- dCTP, CTP and dCTP in decreasing order [H]
COG id: COG0352
COG function: function code H; Thiamine monophosphate synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
Organism=Escherichia coli, GI1788056, Length=123, Percent_Identity=43.9024390243902, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1786288, Length=128, Percent_Identity=32.03125, Blast_Score=78, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: 3.6.1.-; 2.5.1.3
Molecular weight: Translated: 35468; Mature: 35337
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSLRSIHVVAAVIADVRGRLLLSRRTENSDMPGLWEFPGGKRESGETSEQALARELYE CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ELGISADVGEWLMEVPQLYPGKRLRLEVRRVRAWKGGLRGREGQALTWVEPDKLLRYSMP HHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHEECCC PADQPVVGMLRQPDRYLVTPEPGEQDAEWLDAVEHAYRLGIERIQLRMRQHDPVRWSGLV CCCCCHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RQAVQRRGRAHVEVLLNRDIALAEALGIGVHLGAEQLAVLDARPLPVGLPVGASCHCLAD HHHHHHCCCCEEEHHHCCCHHHHHHHHCCEECCHHHHHHCCCCCCCCCCCCCCCHHHHHH LCHAQRIGCDFAVLGPVLPTESHPGAVTLGWERFEQLREQVALPIYAIGGMCADQVKEAR HHHHHHHCCCHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHCCCHHHHCCCCHHHHHHHH RHGAQGIAAMRGLWPGGAKQ HHCHHHHHHHHCCCCCCCCC >Mature Secondary Structure TDSLRSIHVVAAVIADVRGRLLLSRRTENSDMPGLWEFPGGKRESGETSEQALARELYE CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ELGISADVGEWLMEVPQLYPGKRLRLEVRRVRAWKGGLRGREGQALTWVEPDKLLRYSMP HHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHEECCC PADQPVVGMLRQPDRYLVTPEPGEQDAEWLDAVEHAYRLGIERIQLRMRQHDPVRWSGLV CCCCCHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RQAVQRRGRAHVEVLLNRDIALAEALGIGVHLGAEQLAVLDARPLPVGLPVGASCHCLAD HHHHHHCCCCEEEHHHCCCHHHHHHHHCCEECCHHHHHHCCCCCCCCCCCCCCCHHHHHH LCHAQRIGCDFAVLGPVLPTESHPGAVTLGWERFEQLREQVALPIYAIGGMCADQVKEAR HHHHHHHCCCHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHCCCHHHHCCCCHHHHHHHH RHGAQGIAAMRGLWPGGAKQ HHCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe; Mn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 11053429 [H]